ATACFragQC

Name	ATACFragQC JSON
Version	0.4.7 JSON
	download
home_page	https://github.com/0CBH0/ATACFragQC
Summary	Fragment Quality Control for ATAC-seq
upload_time	2023-08-08 09:39:14
maintainer
docs_url	None
author	0CBH0
requires_python	>=3.6
license	MIT
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # ATACFragQC

The Python toolkits designed to control the fragment quality of Bulk/SingCell ATAC-seq.

## Installation
~~~
python3 -m pip install --upgrade ATACFragQC
~~~

## Usage
~~~
# Basic usage
ATACFragQC [options] -i <input.bam> -r <reference.gtf>

# For more information
ATACFragQC -h
~~~

## Features
* The distrubution of fragments in chromosomes
* The distrubution of fragment lengths
* The distrubution of fragments around transcription start sites (TSSs)
* Other feature would be supported in the future ...

## Overview
![Overview of ATACFragQC](https://raw.githubusercontent.com/0CBH0/ATACFragQC/main/Images/MCBULK_qc.png)



            

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