| Name | dynamo2relion JSON |
| Version |
1.0.0
JSON |
| download |
| home_page | |
| Summary | Converts Dynamo table files to RELION star files |
| upload_time | 2022-12-14 13:13:40 |
| maintainer | |
| docs_url | None |
| author | Euan Pyle |
| requires_python | >=3.6 |
| license | BSD 3-Clause License |
| keywords |
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
|
# Dynamo2Relion
## A Tiny Function to Convert Dynamo Tables to Star Files for RELION 4.0
[](https://pypi.python.org/pypi/dynamo2m/)
Based on [dynamo2m](https://github.com/alisterburt/dynamo2m) by Alister Burt.
## Installation
Installation is carried out via:
```sh
pip install dynamo2relion
```
## Requirements
Your directory containing the tilt series directories must be structured as follows:
```sh
tilt_series_directory #Directory containing all TS directories, link to this directory
|
--> TS_01 #Directory containing TS_01
|
--> TS_01.mrc #TS_01 image stack. The file extension does not matter.
|
--> TS_02
|
-->TS_02.mrc #
|
--> etc...
```
The program will ask you the path to tilt_series_directory. No directories other than the TS_* directories should be present in tilt_series_directory. Naming convention for the TS_* directories can be any mix of upper of lower case TS and any numbering convention desired.
## Usage
Instructions for use can be found via typing:
```sh
dynamo2relion --help
```
For binning level, simply enter 1 if the coordinates of your particles in the Dynamo table were picked from an unbinned tomogram. If the tomograms the particles were picked in were binned, add the correct binning level: binning is done using IMOD convention, i.e. for a pixel size of 1 A/px, a binning level of 8 would yield 8 A/px.
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"description": "# Dynamo2Relion\n## A Tiny Function to Convert Dynamo Tables to Star Files for RELION 4.0\n\n[](https://pypi.python.org/pypi/dynamo2m/)\n\nBased on [dynamo2m](https://github.com/alisterburt/dynamo2m) by Alister Burt.\n\n## Installation\n\nInstallation is carried out via:\n```sh\npip install dynamo2relion\n```\n\n## Requirements\n\nYour directory containing the tilt series directories must be structured as follows:\n\n```sh\ntilt_series_directory #Directory containing all TS directories, link to this directory\n|\n--> TS_01 #Directory containing TS_01 \n |\n --> TS_01.mrc #TS_01 image stack. The file extension does not matter. \n|\n--> TS_02 \n |\n -->TS_02.mrc #\n|\n--> etc...\n```\n\nThe program will ask you the path to tilt_series_directory. No directories other than the TS_* directories should be present in tilt_series_directory. Naming convention for the TS_* directories can be any mix of upper of lower case TS and any numbering convention desired. \n\n## Usage\n\nInstructions for use can be found via typing:\n```sh\ndynamo2relion --help\n```\n\nFor binning level, simply enter 1 if the coordinates of your particles in the Dynamo table were picked from an unbinned tomogram. If the tomograms the particles were picked in were binned, add the correct binning level: binning is done using IMOD convention, i.e. for a pixel size of 1 A/px, a binning level of 8 would yield 8 A/px. \n",
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