gencove


Namegencove JSON
Version 2.15.1 PyPI version JSON
download
home_pagehttp://docs.gencove.com
SummaryGencove API and CLI tool
upload_time2024-03-27 19:51:04
maintainerNone
docs_urlNone
authorTomaz Berisa
requires_python>=3.7
licenseApache 2.0
keywords
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # The Gencove CLI

[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)
[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)

## What is Gencove?

Gencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).


The Gencove command-line interface (CLI) can be used to easily access the Gencove platform.

## Main Features

It is most often used for:
* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis
* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:
  * Sequence (`.fastq.gz`)
  * Alignment (`.bam`, `.bai`)
  * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)
* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples

Before filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).

## Installation
```
# install via PyPI
pip install gencove

# updating to latest version
pip install -U gencove
```

## Documentation

Online documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)

API reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)

Comprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)

            

Raw data

            {
    "_id": null,
    "home_page": "http://docs.gencove.com",
    "name": "gencove",
    "maintainer": null,
    "docs_url": null,
    "requires_python": ">=3.7",
    "maintainer_email": null,
    "keywords": null,
    "author": "Tomaz Berisa",
    "author_email": null,
    "download_url": "https://files.pythonhosted.org/packages/4a/d5/7e409220e97b324291fe05280a2105a35f16b900d00d316d586bebcf820d/gencove-2.15.1.tar.gz",
    "platform": null,
    "description": "# The Gencove CLI\n\n[![PyPI Latest Release](https://img.shields.io/pypi/v/gencove.svg)](https://pypi.org/project/gencove/)\n[![License](https://img.shields.io/pypi/l/gencove.svg)](https://github.com/gncv/gencove-cli/blob/master/LICENSE)\n\n## What is Gencove?\n\nGencove is a high-throughput, cost-effective platform for genome sequencing and analysis, enabling a wide array of genomics applications across industries. Furthermore, it is the only enterprise analytics platform for low-pass whole genome sequencing (lpWGS).\n\n\nThe Gencove command-line interface (CLI) can be used to easily access the Gencove platform.\n\n## Main Features\n\nIt is most often used for:\n* [Uploading FASTQ files](https://docs.gencove.com/main/the-gencove-cli/#uploading-fastq-files) for analysis\n* [Downloading analysis results](https://docs.gencove.com/main/the-gencove-cli/#downloading-deliverables) which include the following:\n  * Sequence (`.fastq.gz`)\n  * Alignment (`.bam`, `.bai`)\n  * Imputation (`.vcf.gz`, `.vcf.gz.tbi`, `.vcf.gz.csi`)\n* [Assigning metadata](https://docs.gencove.com/main/the-gencove-cli/#assigning-sample-metadata) to Gencove samples\n\nBefore filing a bug report, please refer to the following [link](https://docs.gencove.com/main/the-gencove-cli/#filing-a-bug-report-for-the-cli). Bugs should be reported [here](https://resources.gencove.com/hc/en-us/requests/new).\n\n## Installation\n```\n# install via PyPI\npip install gencove\n\n# updating to latest version\npip install -U gencove\n```\n\n## Documentation\n\nOnline documentation (with examples) is available at [docs.gencove.com](https://docs.gencove.com/main/introduction/)\n\nAPI reference for publicly available endpoints: [API Reference](https://api.gencove.com/api/v2/docs/)\n\nComprehensive CLI Documentation available: [CLI Reference](https://docs.gencove.com/cli/)\n",
    "bugtrack_url": null,
    "license": "Apache 2.0",
    "summary": "Gencove API and CLI tool",
    "version": "2.15.1",
    "project_urls": {
        "Homepage": "http://docs.gencove.com"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "d05c3d9addbf5042cd29365c4d5bb8e452db91504024fa3981fe066384e10246",
                "md5": "f4710b851733a63ddb2209adbf4127b8",
                "sha256": "f8943b3412fe1d42ef323ee63f82d89a9039f2beeda898a7bfe44c52c139ace7"
            },
            "downloads": -1,
            "filename": "gencove-2.15.1-py2.py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "f4710b851733a63ddb2209adbf4127b8",
            "packagetype": "bdist_wheel",
            "python_version": "py2.py3",
            "requires_python": ">=3.7",
            "size": 270104,
            "upload_time": "2024-03-27T19:51:01",
            "upload_time_iso_8601": "2024-03-27T19:51:01.613679Z",
            "url": "https://files.pythonhosted.org/packages/d0/5c/3d9addbf5042cd29365c4d5bb8e452db91504024fa3981fe066384e10246/gencove-2.15.1-py2.py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "4ad57e409220e97b324291fe05280a2105a35f16b900d00d316d586bebcf820d",
                "md5": "07a26585351d842aac14c6b372e00036",
                "sha256": "278ac0770319218d4ceececb0e3da6d4f8708267e95a234cab836f378a68fac1"
            },
            "downloads": -1,
            "filename": "gencove-2.15.1.tar.gz",
            "has_sig": false,
            "md5_digest": "07a26585351d842aac14c6b372e00036",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3.7",
            "size": 132013,
            "upload_time": "2024-03-27T19:51:04",
            "upload_time_iso_8601": "2024-03-27T19:51:04.267707Z",
            "url": "https://files.pythonhosted.org/packages/4a/d5/7e409220e97b324291fe05280a2105a35f16b900d00d316d586bebcf820d/gencove-2.15.1.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-03-27 19:51:04",
    "github": false,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "lcname": "gencove"
}
        
Elapsed time: 0.23445s