| Name | momapy JSON |
| Version |
0.1.0
JSON |
| download |
| home_page | None |
| Summary | A library for working with molecular maps |
| upload_time | 2024-08-30 11:32:54 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.11 |
| license | GPL-3.0-or-later |
| keywords |
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| VCS |
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| bugtrack_url |
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| requirements |
No requirements were recorded.
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| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
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# momapy
`MomaPy` is a new Python library for working with molecular maps such as SBGN maps.
Its key feature is its definition of a map, that is now formed of two entities: a model, that describes what concepts are represented, and a layout, that describes how these concepts are represented.
This definition is borrowed from SBML and its layout/render extensions, that allow users to add a layout to an SBML model.
`MomaPy` aims at extending this definition to all types of molecular maps, and in particular to SBGN maps.
`MomaPy` offers the following features:
* support for SBGN PD and AF maps (read/write SBGN-ML with annotations, rendering information, and notes)
* decomposition of a map object into:
- a model object;
- a layout object;
- a mapping between the model and layout objects' subelements.
* map, model, layout and mapping objects comparison; fast object in set checking
* rendering of maps to images (SVG, PDF, JPEG, PNG, WebP) and other surfaces (e.g. GLFW window)
* support for styling and css like stylesheets (including effects such as shadows)
* automatic geometry and anchors (for arcs, shape borders)
* local positioning (e.g. right of shape, fit set of shapes)
* easy extension with new model and layout subelements
`MomaPy` is still in its initial development phase.
As such, it is not yet released nor documented, and may change at any time.
However, the features of `MomaPy` are demonstrated in a jupyter notebook that can be found [here](https://github.com/adrienrougny/momapy/blob/main/src/momapy/demo/demo.ipynb).
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