mrnaScan

Name	mrnaScan JSON
Version	0.1.2 JSON
	download
home_page	https://github.com/0CBH0/mrnaScan
Summary	Identify exons and 3'UTR of each reads for full-length mRNA-seq
upload_time	2024-08-07 23:16:23
maintainer	None
docs_url	None
author	0CBH0
requires_python	>=3.6
license	MIT
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # mrnaScan

The Python toolkits designed to identify exons and 3'UTR of each reads for bulk/single-cell full-length mRNA-seq

## Installation
~~~
python3 -m pip install --upgrade mrnaScan
~~~

## Usage
~~~
# Basic usage
mrnaScan [options] -i <input.bam> -r <reference.gtf>

# For more information
mrnaScan -h
~~~

## Output
* *_exon_info.h5: a hdf5 file include count table of pesudo-transcripts and their exon information
* *_utr_info.tsv: a tab-separated table of 3'utr length of each gene

## Features
* The exons and 3'utr of each reads
* The pesudo-transcripts defined via the combination of exons
* The count table of pesudo-transcripts
* Other feature would be supported in the future ...



            

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