# napari-correct-drift
[](https://github.com/sommerc/napari-correct-drift/raw/main/LICENSE)
[](https://pypi.org/project/napari-correct-drift)
[](https://python.org)
[](https://github.com/sommerc/napari-correct-drift/actions)
[](https://codecov.io/gh/sommerc/napari-correct-drift)
[](https://napari-hub.org/plugins/napari-correct-drift)
Napari-correct-drift brings the functionality of Fiji’s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.
Napari-correct-drift supports drift correction for 2D/3D multi-channel data.
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## Example
https://user-images.githubusercontent.com/895863/235100349-83379350-06a5-4fe7-9323-f3e5771cca2e.mp4
## Test data
Napari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing [root tip](https://seafile.ist.ac.at/f/b05362d4f358430c8c59/?dl=1) file.
## Installation
You can install `napari-correct-drift` via [pip]:
pip install napari-correct-drift
To install latest development version :
pip install git+https://github.com/sommerc/napari-correct-drift.git
## Roadmap
- [x] Basic CorrectDrift interface
- [x] Synthetic test data
- [x] Unit tests
- [x] 2D/3D multi-channel support
- [x] ROI support (rectangles)
- [x] Saving and loading of drift tables
- [x] Outlier handling
- [ ] Sphinx documentation
- [ ] How-tos
- [ ] Tutorials and Guides
## Contributing
Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.
## License
Distributed under the terms of the [BSD-3] license,
"napari-correct-drift" is free and open source software
### Acknowledgment
This project has been made possible in part by grant number NP2-0000000051 from the napari Plugin Foundations Grants (Cycle 2).
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"description": "# napari-correct-drift\n\n[](https://github.com/sommerc/napari-correct-drift/raw/main/LICENSE)\n[](https://pypi.org/project/napari-correct-drift)\n[](https://python.org)\n[](https://github.com/sommerc/napari-correct-drift/actions)\n[](https://codecov.io/gh/sommerc/napari-correct-drift)\n[](https://napari-hub.org/plugins/napari-correct-drift)\n\nNapari-correct-drift brings the functionality of Fiji\u2019s popular Correct-3D-drift macro to Napari for flexible and efficient correction of stage and sample drift common in time-lapse microscopy.\n\nNapari-correct-drift supports drift correction for 2D/3D multi-channel data.\n\n----------------------------------\n## Example\n\nhttps://user-images.githubusercontent.com/895863/235100349-83379350-06a5-4fe7-9323-f3e5771cca2e.mp4\n\n\n## Test data\nNapari-correct-drift contains synthetic sample data. To test it on real data download an example Arabidopsis growing [root tip](https://seafile.ist.ac.at/f/b05362d4f358430c8c59/?dl=1) file.\n\n## Installation\n\nYou can install `napari-correct-drift` via [pip]:\n\n pip install napari-correct-drift\n\n\n\nTo install latest development version :\n\n pip install git+https://github.com/sommerc/napari-correct-drift.git\n\n## Roadmap\n\n- [x] Basic CorrectDrift interface\n- [x] Synthetic test data\n- [x] Unit tests\n- [x] 2D/3D multi-channel support\n- [x] ROI support (rectangles)\n- [x] Saving and loading of drift tables\n- [x] Outlier handling\n- [ ] Sphinx documentation\n- [ ] How-tos\n- [ ] Tutorials and Guides\n\n## Contributing\n\nContributions are very welcome. Tests can be run with [tox], please ensure\nthe coverage at least stays the same before you submit a pull request.\n\n## License\n\nDistributed under the terms of the [BSD-3] license,\n\"napari-correct-drift\" is free and open source software\n\n### Acknowledgment\nThis project has been made possible in part by grant number NP2-0000000051 from the napari Plugin Foundations Grants (Cycle 2).\n",
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