A image processing pipeline to automatically crop and quantify tumor burdens (radiance) in mice treated with bioluminescent tumors.
Intutitive processing of quantitative radiance data and raw mouse images is supported through a user friendly GUI interface.
PDF tutorial for GUI is hosted on google drive:
https://drive.google.com/file/d/1Q7HhJTXOGI4TXo2OvoolGBY3IscC_FG0/view?usp=sharing
To use this package:
1. If anaconda is not installed, follow installation instructions here: https://docs.anaconda.com/anaconda/install/
2. Start terminal, type in and enter:
```
conda activate
```
3. Now install radianceQuantifier via PyPi by typing the following line in the terminal:
```
pip install radianceQuantifier
```
4. In this anaconda environment, type:
```
python3 -m radianceQuantifier
```
to start the program
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