| Name | Version | Summary | date |
| asari-metabolomics-dev |
1.15.dev4 |
LC-MS metabolomics data preprocessing |
2025-10-23 17:27:59 |
| evo2-mcp |
0.2.2 |
MCP server for generating, scoring and embedding genomic sequences using Evo 2 |
2025-10-23 13:49:43 |
| metamist |
7.11.2 |
Python API for interacting with the Sample API system |
2025-10-23 00:09:55 |
| cell-decipher |
0.3.1 |
DECIPHER for learning disentangled cellular embeddings in large-scale heterogeneous spatial omics data |
2025-10-22 09:28:44 |
| MutClust |
0.1.4 |
MutClust: Mutual rank-based coexpression and clustering. |
2025-10-22 04:00:45 |
| pyxetabase |
3.1.2 |
A REST client for OpenCGA enterprise REST web services |
2025-10-21 21:07:03 |
| markdup |
0.0.15 |
Fast, accurate BAM deduplication with intelligent UMI detection and correct fragment detection |
2025-10-21 18:37:44 |
| pyprophet |
3.0.4 |
PyProphet: Semi-supervised learning and scoring of OpenSWATH results. |
2025-10-21 00:06:07 |
| plantismash |
2.0b4 |
Detection of plant specialized metabolism gene clusters in plants |
2025-10-20 23:23:52 |
| partis-bcr |
1.0.16 |
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference |
2025-10-20 21:45:55 |
| prseq |
0.0.30 |
Python tools (backed by Rust) for sequence analysis |
2025-10-20 10:23:26 |
| pyranges1 |
1.1.5 |
GenomicRanges for Python. |
2025-10-19 15:11:33 |
| kmerdb |
0.9.6 |
Yet another k-mer counter for Genomics, Metagenomics, and Phylogenomics applications... |
2025-10-19 08:21:59 |
| votuderep |
0.4.0 |
A CLI tool for dereplicating and filtering viral contigs |
2025-10-17 14:07:37 |
| snippy-nextgen |
1.12.2 |
The Next Generation of Microbial Variant Calling with Snippy |
2025-10-17 04:49:48 |
| Binette |
1.2.0 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2025-10-14 14:35:04 |
| ivybloom |
0.7.1 |
Command-line interface for computational biology and drug discovery |
2025-10-13 20:51:48 |
| shepherd-score |
1.1.4 |
3D scoring functions used for evaluation of ShEPhERD |
2025-10-12 18:09:27 |
| spymot |
2.1.4.dev0 |
Advanced Protein Motif Detection with AlphaFold Structural Validation |
2025-10-10 19:42:07 |
| checkamg |
0.5.3 |
Automated identification and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary Regulatory Genes (AReGs), and Auxiliary Physiology Genes (APGs) in viral genomes. |
2025-10-10 18:12:51 |