| Name | Version | Summary | date |
| phic |
2.0.13 |
Polymer dynamics deciphered from Hi-C data |
2024-02-09 09:18:30 |
| igv-reports |
1.12.0 |
Creates self-contained html pages for visual variant review with IGV (igv.js). |
2024-02-08 21:10:00 |
| cogent3 |
2024.2.5a1 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2024-02-05 00:15:39 |
| genepattern-python |
24.1 |
Library for programmatically interacting with GenePattern from Python. |
2024-01-26 19:48:51 |
| blobtk |
0.5.3 |
Core utilities for BlobToolKit. |
2024-01-24 11:35:44 |
| mitywgs |
1.0.0 |
A sensitive Mitochondrial variant detection pipeline from WGS data |
2024-01-22 00:02:04 |
| mutalyzer-algebra |
1.5.1 |
A Boolean Algebra for Genetic Variants |
2024-01-16 09:36:48 |
| DSBplot |
0.1.3 |
A package for visualizing alignment variations in DNA-seq data from double-strand break (DSB) experiments. |
2024-01-12 00:29:41 |
| harmony-pytorch |
0.1.8 |
Pytorch implementation of Harmony algorithm on single-cell sequencing data integration |
2024-01-07 21:36:56 |
| pegasusio |
0.8.2 |
Pegasusio is a Python package for reading / writing single-cell genomics data |
2024-01-06 01:45:41 |
| snipgenie |
0.6.0 |
variant calling and phylogenies from microbial WGS data |
2023-12-15 20:33:46 |
| lightmotif |
0.6.0 |
PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. |
2023-12-13 16:35:20 |
| gene-connector-cli |
0.6.5 |
The Gene-Connector command line interface |
2023-12-10 15:18:46 |
| sphae |
1.31 |
Assembling pure culture phages from both Illumina and Nanopore sequencing technology |
2023-11-30 02:26:41 |
| gollumpy |
1.0.5 |
detection of rings on acrocentric chromosomes using short reads sequencing |
2023-11-24 10:50:22 |
| genomicspy |
0.2.1 |
Tools for manipulating vcfs doing genomics work |
2023-11-18 10:12:29 |
| gene-thesaurus |
2.0.0 |
GeneThesaurus is a Python package that translates gene aliases and old gene symbols to the current HGNC standard gene symbols. |
2023-11-16 14:11:24 |
| hic2cool |
1.0.1 |
Converter between hic files (from juicer) and single-resolution or multi-resolution cool files (for cooler). Both hic and cool files describe Hi-C contact matrices. Intended to be lightweight, this can be used as an imported package or a stand-alone Python tool for command line conversion. |
2023-11-14 21:35:42 |
| cgbeacon2 |
4.5.1 |
A beacon supporting GA4GH API 1.0 |
2023-11-14 08:41:48 |
| pysnptools |
0.5.11 |
PySnpTools |
2023-11-12 22:45:15 |