# MicroView
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MicroView, a reporting tool for taxonomic classification
MicroView agreggates results from taxonomic classification tools,
such as Kaiju and Kraken, building an interactive HTML report with
insightful visualizations.
Checkout the [full documentation](https://microview-bio.readthedocs.io/en/latest/?badge=latest).
## Quickstart
Install the package:
```sh
pip install microview
```
Go to your directory containing Kaiju/Kraken-style results and run:
```sh
microview -t .
```
Alternatively, if you have a CSV table defining result paths and contrasts, like this:
```
sample,group
result_1.tsv,group_one
result_2.tsv,group_two
...etc...
```
You can run MicroView like this:
```sh
microview -df contrast_table.csv -o report_with_table.html
```
Then, an HTML file named `microview_report.html` -
or the name you defined with the `-o` param -
should be available in your working directory,
try opening it with your browser!
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