PixMClass


NamePixMClass JSON
Version 0.1.0 PyPI version JSON
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home_pagehttps://github.com/jeanollion/pix_mclass
SummaryMulticlass pixel classification
upload_time2024-04-12 15:50:17
maintainerNone
docs_urlNone
authorJean Ollion
requires_python>=3
licenseNone
keywords segmentation classification microscopy cell
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # Multiclass pixel classifier
Deep learning segmentation method with very low annotation requirement.

Similar to [Ilastik pixel classification](https://www.ilastik.org/documentation/pixelclassification/pixelclassification) procedure, but based on a deep neural network.

Described and used in the work [Near-infrared co-illumination of fluorescent proteins reduces photobleaching and phototoxicity](https://doi.org/10.1038/s41587-023-01893-7). Please cite this work when using this method. 

Docuementation: see this [tutorial](https://github.com/jeanollion/bacmman/wiki/Train-and-use-PixMClass)

            

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