# Lipid Librarian
## Build and Installation Instructions
### Python Virtual Environment
make install install_optional
### Docker Container (Docker < 25.0.0)
docker build -t lipidlibrarian -f Containerfile .
### Docker Container (Docker >= 25.0.0)
docker buildx -t lipidlibrarian -f Containerfile .
### OCI Container for Docker/Podman/Kubernetes
buildah build -t lipidlibrarian -f Containerfile .
## Run Lipid Librarian
### CLI
In case you installed Lipid Librarian into a 'venv' virtual environment, make sure you activate it before with `source venv/bin/activate`.
lipidlibrarian "PC(18:1_20:0)" "410.243;0.01" "PC(56:8)"
lipidlibrarian path/to/file
cat path/to/file | lipidlibrarian
### Docker
docker run lipidlibrarian "PC(18:1_20:0)" "410.243;0.01" "PC(56:8)"
### Podman
podman run lipidlibrarian "PC(18:1_20:0)" "410.243;0.01" "PC(56:8)"
### Import Python Package
```python
from lipidlibrarian.LipidQuery import *
query1 = LipidQuery("PC(18:1_20:0)").query()
query2 = LipidQuery("410.243;0.01").query()
query3 = LipidQuery("PC(56:8)").query()
for lipid in query1:
print(repr(lipid))
for lipid in query2:
print(format(lipid, 'json'))
for lipid in query3:
print(format(lipid, 'html'))
```
Raw data
{
"_id": null,
"home_page": "",
"name": "lipidlibrarian",
"maintainer": "",
"docs_url": null,
"requires_python": ">=3.10",
"maintainer_email": "",
"keywords": "lipids,bioinformatics,development",
"author": "Konstantinos Mechteridis, Konstantin Pelz",
"author_email": "Felix Niedermaier <felix.niedermaier@tum.de>",
"download_url": "https://files.pythonhosted.org/packages/75/0b/60023b1884dc4b9150a8f2f490f0144167b61be203a393933d6ca70557d4/lipidlibrarian-0.2.1.tar.gz",
"platform": null,
"description": "# Lipid Librarian\n\n## Build and Installation Instructions\n\n### Python Virtual Environment\n\n make install install_optional\n\n### Docker Container (Docker < 25.0.0)\n\n docker build -t lipidlibrarian -f Containerfile .\n\n### Docker Container (Docker >= 25.0.0)\n\n docker buildx -t lipidlibrarian -f Containerfile .\n\n### OCI Container for Docker/Podman/Kubernetes\n\n buildah build -t lipidlibrarian -f Containerfile .\n\n## Run Lipid Librarian\n\n### CLI\n\nIn case you installed Lipid Librarian into a 'venv' virtual environment, make sure you activate it before with `source venv/bin/activate`.\n\n lipidlibrarian \"PC(18:1_20:0)\" \"410.243;0.01\" \"PC(56:8)\"\n lipidlibrarian path/to/file\n cat path/to/file | lipidlibrarian\n\n### Docker\n\n docker run lipidlibrarian \"PC(18:1_20:0)\" \"410.243;0.01\" \"PC(56:8)\"\n\n### Podman\n\n podman run lipidlibrarian \"PC(18:1_20:0)\" \"410.243;0.01\" \"PC(56:8)\"\n\n### Import Python Package\n\n```python\nfrom lipidlibrarian.LipidQuery import *\n\nquery1 = LipidQuery(\"PC(18:1_20:0)\").query()\nquery2 = LipidQuery(\"410.243;0.01\").query()\nquery3 = LipidQuery(\"PC(56:8)\").query()\n\nfor lipid in query1:\n print(repr(lipid))\n\nfor lipid in query2:\n print(format(lipid, 'json'))\n\nfor lipid in query3:\n print(format(lipid, 'html'))\n```\n",
"bugtrack_url": null,
"license": "",
"summary": "A Lipidomics Database Explorer Package",
"version": "0.2.1",
"project_urls": {
"Bug Reports": "https://github.com/lipitum/lipidlibrarian/issues",
"Source": "https://github.com/lipitum/lipidlibrarian/"
},
"split_keywords": [
"lipids",
"bioinformatics",
"development"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "4693f811673028bf44061c0611bb3ea2dc44db7c2927fd360159f86a6d664728",
"md5": "c1325f693dd5f191bc17c2a21a899b6a",
"sha256": "5430f53e68c247d8f17045b00a7d553dd6246fa9c6e089d9a9dfeb2a3dc35d30"
},
"downloads": -1,
"filename": "lipidlibrarian-0.2.1-py3-none-any.whl",
"has_sig": false,
"md5_digest": "c1325f693dd5f191bc17c2a21a899b6a",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.10",
"size": 80424726,
"upload_time": "2024-01-24T16:30:41",
"upload_time_iso_8601": "2024-01-24T16:30:41.639210Z",
"url": "https://files.pythonhosted.org/packages/46/93/f811673028bf44061c0611bb3ea2dc44db7c2927fd360159f86a6d664728/lipidlibrarian-0.2.1-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "750b60023b1884dc4b9150a8f2f490f0144167b61be203a393933d6ca70557d4",
"md5": "eb6cbb0c3286a1a2b672b0be31d5805b",
"sha256": "537de052016b5a93685a5ebf9f9b824af39a7ce10b2a5b579d41ff17181887ae"
},
"downloads": -1,
"filename": "lipidlibrarian-0.2.1.tar.gz",
"has_sig": false,
"md5_digest": "eb6cbb0c3286a1a2b672b0be31d5805b",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.10",
"size": 79218855,
"upload_time": "2024-01-24T16:30:47",
"upload_time_iso_8601": "2024-01-24T16:30:47.621959Z",
"url": "https://files.pythonhosted.org/packages/75/0b/60023b1884dc4b9150a8f2f490f0144167b61be203a393933d6ca70557d4/lipidlibrarian-0.2.1.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-01-24 16:30:47",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "lipitum",
"github_project": "lipidlibrarian",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "lipidlibrarian"
}
JSON
