| Name | mflike JSON |
| Version |
0.9.6
JSON |
| download |
| home_page | None |
| Summary | SO LAT multi-frequency likelihood for cobaya |
| upload_time | 2024-03-28 21:45:48 |
| maintainer | None |
| docs_url | None |
| author | Simons Observatory Collaboration Power Spectrum Group aka so_ps 1 & 2 |
| requires_python | >=3.9.0 |
| license | BSD License Copyright (c) 2023, Simons Observatory Collaboration Analysis Library Task Force All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. * Neither the name of the copyright holder nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
| keywords |
likelihood
so lat
cosmology
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
=============================
LAT Multifrequency Likelihood
=============================
An external likelihood using `cobaya <https://github.com/CobayaSampler/cobaya>`_.
.. image:: https://img.shields.io/pypi/v/mflike.svg?style=flat
:target: https://pypi.python.org/pypi/mflike
.. image:: https://img.shields.io/github/actions/workflow/status/simonsobs/LAT_MFLike/testing.yml?branch=master
:target: https://github.com/simonsobs/LAT_MFLike/actions
.. image:: https://readthedocs.org/projects/lat-mflike/badge/?version=latest
:target: https://lat-mflike.readthedocs.io/en/latest/?badge=latest
.. image:: https://mybinder.org/badge_logo.svg
:target: https://mybinder.org/v2/gh/simonsobs/LAT_MFLike/master?filepath=notebooks%2Fmflike_tutorial.ipynb
.. image:: https://codecov.io/gh/simonsobs/LAT_MFLike/branch/master/graph/badge.svg?token=qrrVcbNCs5
:target: https://codecov.io/gh/simonsobs/LAT_MFLike
Installing the code
-------------------
The easiest way to install and to use ``mflike`` likelihood is *via* ``pip``
.. code:: shell
pip install mflike
If you want to dig into the code, you'd better clone this repository to some location
.. code:: shell
git clone https://github.com/simonsobs/LAT_MFLike.git /where/to/clone
Then you can install the ``mflike`` likelihood and its dependencies *via*
.. code:: shell
pip install -e /where/to/clone
The ``-e`` option allow the developer to make changes within the ``mflike`` directory without having
to reinstall at every changes. If you plan to just use the likelihood and do not develop it, you can
remove the ``-e`` option.
Installing LAT likelihood data
------------------------------
Preliminary simulated data can be found at `NERSC
<https://portal.nersc.gov/cfs/sobs/users/MFLike_data>`_. You can download them by yourself but you
can also use the ``cobaya-install`` binary and let it do the installation job. For instance, if you
do the next command
.. code:: shell
cobaya-install /where/to/clone/examples/mflike_example.yaml -p /where/to/put/packages
data and code such as `CAMB <https://github.com/cmbant/CAMB>`_ will be downloaded and installed
within the ``/where/to/put/packages`` directory. For more details, you can have a look to ``cobaya``
`documentation <https://cobaya.readthedocs.io/en/latest/installation_cosmo.html>`_.
Running/testing the code
------------------------
You can test the ``mflike`` likelihood by doing
.. code:: shell
cobaya-run /where/to/clone/examples/mflike_example.yaml -p /where/to/put/packages
which should run a MCMC sampler for the simulation n°44 (*i.e.* ``data_sacc_00044.fits`` in the
``mflike_example.yaml`` file) using the combination of TT, TE and EE spectra (*i.e.*
``polarizations: ['TT', 'TE', 'ET', 'EE']``). The results will be stored in the ``chains/mcmc``
directory.
Simulation releases
-------------------
- ``v0.8`` release has spectra produced with high accuracy camb parameters up to ``ell = 9000``, the foreground components are integrated in frequency using top-hat bandpasses, stored in the ``sacc`` files
- ``v0.7.1`` is a bugfix release of ``v0.7`` release where the mono-frequency and dirac bandpasses
have been correctly set with the ``sacc`` files
- ``v0.7`` release includes the ACT like foregrounds. Simulation parameters are also stored within ``sacc`` metadata and the associated ``dict`` file can be viewed `here <https://gist.github.com/xgarrido/5d2fdbe4232cfa9ad1156ee30baa7811>`_.
- ``v0.6`` release make use of CMB map based simulations (see https://github.com/simonsobs/map_based_simulations/blob/master/201911_lensed_cmb/README.md). Only temperature foregrounds were considered.
Releases prior to ``v0.6`` version were development simulations and should not be used for simulation analysis.
Contributors
------------
.. image:: https://contrib.rocks/image?repo=simonsobs/LAT_MFLike
:target: https://github.com/simonsobs/LAT_MFLike/graphs/contributors
Raw data
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