SnapGene Utils
===============
SnapGene Utils is a Python library to parse Snapgene ``*.dna`` files into dictionaries or Biopython SeqRecords:
.. code:: python
from snapgene_utils import snapgene_file_to_dict, snapgene_file_to_seqrecord
file_path = './snap_gene_file.dna'
dictionary = snapgene_file_to_dict(filepath)
seqrecord = snapgene_file_to_seqrecord(filepath)
Installation
------------
Install with PIP:
.. code:: bash
pip install snapgene_utils
Test with Pytest:
.. code:: bash
pytest --cov=snapgene_utils tests/
Development
------------
.. code:: bash
python3 -m venv venv
source venv/bin/activate
pip install -e .
pip install -r requirements_dev.txt
## Run tests
./venv/bin/pytest tests/
## Distribute
## Make sure credentials are stored under ~/.pypirc
git tag <version>
git push origin --tags
python -m build
twine upload --repository pypi dist/*
Licence = MIT
-------------
SnapGene Utils is an open-source software originally written by `Isaac Luo <https://github.com/IsaacLuo>`_ at the Cai Lab. This fork is released under the MIT licence. Everyone is welcome to contribute!
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