tstrait


Nametstrait JSON
Version 0.1.0 PyPI version JSON
download
home_pagehttps://tskit.dev/tstrait/
SummaryQuantitative trait simulation of tree sequence data
upload_time2024-03-11 14:20:09
maintainerTskit Developers
docs_urlNone
author
requires_python>=3.8
licenseMIT
keywords gwas population genetics quantitative trait simulation statistical genetics tree sequence tskit
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            # tstrait

**tstrait** is a quantitative trait simulator of [tskit](https://tskit.readthedocs.io/) tree sequences.

- Documentation: https://tskit.dev/tstrait/docs/
- Source code: https://github.com/tskit-dev/tstrait
- Tree sequence documentation: https://tskit.dev/learn/

It provides:
- Simulation of quantitative traits
- Simulation of genetic effect sizes from various distributions
- Simulation of pleiotropic phenotypes
- Simulation of environmental noise
- Computation of individual genetic values given the effect sizes of causal mutations

            

Raw data

            {
    "_id": null,
    "home_page": "https://tskit.dev/tstrait/",
    "name": "tstrait",
    "maintainer": "Tskit Developers",
    "docs_url": null,
    "requires_python": ">=3.8",
    "maintainer_email": "admin@tskit.dev",
    "keywords": "gwas,population genetics,quantitative trait,simulation,statistical genetics,tree sequence,tskit",
    "author": "",
    "author_email": "",
    "download_url": "https://files.pythonhosted.org/packages/96/59/593a4a5833767b4eaecdfd63b308f56bca3ce117e9a569cc30d7ac7db403/tstrait-0.1.0.tar.gz",
    "platform": "POSIX",
    "description": "# tstrait\n\n**tstrait** is a quantitative trait simulator of [tskit](https://tskit.readthedocs.io/) tree sequences.\n\n- Documentation: https://tskit.dev/tstrait/docs/\n- Source code: https://github.com/tskit-dev/tstrait\n- Tree sequence documentation: https://tskit.dev/learn/\n\nIt provides:\n- Simulation of quantitative traits\n- Simulation of genetic effect sizes from various distributions\n- Simulation of pleiotropic phenotypes\n- Simulation of environmental noise\n- Computation of individual genetic values given the effect sizes of causal mutations\n",
    "bugtrack_url": null,
    "license": "MIT",
    "summary": "Quantitative trait simulation of tree sequence data",
    "version": "0.1.0",
    "project_urls": {
        "Bug Tracker": "https://github.com/tskit-dev/tstrait/issues",
        "Documentation": "https://tskit.dev/tstrait/docs/",
        "Download": "https://pypi.python.org/pypi/tstrait",
        "Homepage": "https://tskit.dev/tstrait/",
        "Source Code": "https://github.com/tskit-dev/tstrait"
    },
    "split_keywords": [
        "gwas",
        "population genetics",
        "quantitative trait",
        "simulation",
        "statistical genetics",
        "tree sequence",
        "tskit"
    ],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "0f60c4e8b9d928ac642a5787cac74f7a637c913a766c56a2d591fa731c9c7967",
                "md5": "768e760ef35a11204d63cf06f44ae3fb",
                "sha256": "a7221f3039ae40d10f9ce5d07e91ac5434ed8c09736c21d0ef803fb32794d6a4"
            },
            "downloads": -1,
            "filename": "tstrait-0.1.0-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "768e760ef35a11204d63cf06f44ae3fb",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": ">=3.8",
            "size": 16629,
            "upload_time": "2024-03-11T14:20:08",
            "upload_time_iso_8601": "2024-03-11T14:20:08.044540Z",
            "url": "https://files.pythonhosted.org/packages/0f/60/c4e8b9d928ac642a5787cac74f7a637c913a766c56a2d591fa731c9c7967/tstrait-0.1.0-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "9659593a4a5833767b4eaecdfd63b308f56bca3ce117e9a569cc30d7ac7db403",
                "md5": "db61548c934b32fa5e97c8366fdf24a4",
                "sha256": "60e6b88cfc913625f3f7f06a368768e192532225ae30f3d51bd5658f9df48f78"
            },
            "downloads": -1,
            "filename": "tstrait-0.1.0.tar.gz",
            "has_sig": false,
            "md5_digest": "db61548c934b32fa5e97c8366fdf24a4",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": ">=3.8",
            "size": 105247,
            "upload_time": "2024-03-11T14:20:09",
            "upload_time_iso_8601": "2024-03-11T14:20:09.212730Z",
            "url": "https://files.pythonhosted.org/packages/96/59/593a4a5833767b4eaecdfd63b308f56bca3ce117e9a569cc30d7ac7db403/tstrait-0.1.0.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-03-11 14:20:09",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "tskit-dev",
    "github_project": "tstrait",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": true,
    "lcname": "tstrait"
}
        
Elapsed time: 0.20023s