Name | Version | Summary | date |
crocodeel |
1.0.2 |
CroCoDeEL is a tool that detects cross-sample (aka well-to-well) contamination in shotgun metagenomic data |
2024-05-03 09:00:08 |
MicroView |
0.11.0 |
Generate reports from metagenomics data |
2024-05-02 18:41:26 |
metacoag |
1.2.0 |
MetaCoAG: Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs |
2024-04-24 05:54:11 |
graphbin2 |
1.2.3 |
GraphBin2: Refined and Overlapped Binning of Metagenomic Contigs Using Assembly Graphs |
2024-04-22 07:00:48 |
prophyle |
0.3.3.2 |
ProPhyle metagenomic classifier |
2024-04-21 15:31:41 |
meteor |
2.0.9 |
Meteor - A plateform for quantitative metagenomic profiling of complex ecosystems |
2024-04-16 09:11:33 |
mDeepFRI |
1.1.5 |
Pipeline for searching and aligning contact maps for proteins, then running DeepFri's GCN. |
2024-04-01 22:24:07 |
SuperPang |
1.3.0 |
Non-redundant pangenome assemblies from multiple genomes or bins |
2024-03-18 11:34:41 |
cocopye |
0.4.0 |
Feature-based prediction of genome quality indices |
2024-02-15 14:30:41 |
recentrifuge |
1.14.0 |
Robust comparative analysis and contamination removal for metagenomics |
2024-02-06 07:35:12 |
Binette |
1.0.0 |
Binette: accurate binning refinement tool to constructs high quality MAGs. |
2024-01-29 22:20:14 |
midas2 |
1.1.3 |
https://midas2.readthedocs.io/en/latest/ |
2023-12-06 08:17:49 |
MetaCHIP2 |
2.3.8 |
HGT detection pipeline |
2023-11-24 03:28:09 |
singlem |
0.16.0 |
Novelty-inclusive microbial community profiling of shotgun metagenomes |
2023-11-24 01:36:48 |
taxpasta |
0.6.1 |
TAXonomic Profile Aggregation and STAndardisation |
2023-10-04 08:39:25 |
fetch-tool |
0.9.0 |
Utility to fetch public and private RAW read and assembly files from the ENA |
2023-09-01 12:34:05 |
combined-gene-caller |
1.0.4 |
Combined gene caller for MGnify pipeline, to combine predictions from FragGeneScan and Prodigal |
2023-08-14 13:58:29 |
MetaCHIP |
1.10.13 |
HGT detection pipeline |
2023-05-17 23:54:47 |
MetaSBT |
0.1.2 |
A scalable framework for automatically indexing microbial genomes and accurately characterizing metagenome-assembled genomes with sequence bloom trees |
2023-05-16 19:03:02 |
magpurify2 |
1.0.2 |
Identify and remove contaminants from metagenome-assembled genomes. |
2023-05-16 02:58:08 |