PyDigger - unearthing stuff about Python


NameVersionSummarydate
pyrodigal 3.4.0 Cython bindings and Python interface to Prodigal, an ORF finder for genomes and metagenomes. 2024-05-19 09:36:23
pytantan 0.1.1 Cython bindings and Python interface to Tantan, a fast method for identifying repeats in DNA and protein sequences. 2024-05-15 09:53:14
pyswrd 0.2.0 Cython bindings and Python interface to SWORD (Smith Waterman On Reduced Database), a heuristic method for fast database search. 2024-05-15 09:35:01
mini3di 0.1.1 A NumPy port of the foldseek code for encoding structures to 3di. 2024-05-10 14:56:48
pyopal 0.6.0 Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner. 2024-05-08 16:37:52
pyfamsa 0.4.0 Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments. 2024-05-06 14:42:23
scoring-matrices 0.2.0 Dependency free, Cython-compatible scoring matrices to use with biological sequences. 2024-05-06 11:19:44
pyhmmer 0.10.12 Cython bindings and Python interface to HMMER3. 2024-04-25 17:30:59
pronto 2.5.7 Python frontend to ontologies. 2024-04-24 13:39:46
pyjess 0.1.1 Cython bindings and Python interface to JESS, a 3D template matching software. 2024-04-18 16:24:13
gb-io 0.3.3 A Python interface to gb-io, a fast GenBank parser and serializer written in Rust. 2024-04-13 23:02:36
nafcodec 0.2.0 PyO3 bindings and Python interface to nafcodec, an encoder/decoder for Nucleotide Archive Format (NAF) files. 2024-04-10 09:49:14
gecco-tool 0.9.10 Gene cluster prediction with Conditional random fields. 2024-02-27 16:10:51
torch-treecrf 0.2.0 A PyTorch implementation of Tree-structured Conditional Random Fields. 2024-02-16 12:37:02
lightmotif 0.6.0 PyO3 bindings and Python interface to lightmotif, a library for platform-accelerated biological motif scanning using position weight matrices. 2023-12-13 16:35:20
fastobo 0.12.3 Faultless AST for Open Biomedical Ontologies in Python. 2023-12-06 12:34:30
pyrodigal-gv 0.3.0 A Pyrodigal extension to predict genes in giant viruses and viruses with alternative genetic code. 2023-11-27 15:28:42
nmrml2isa 0.3.3 nmrml2isa - nmrML to ISA-Tab parsing tool 2023-11-06 16:00:57
fs.sshfs 1.0.2 Pyfilesystem2 over SSH using paramiko 2023-08-17 09:45:45
pytrimal 0.7.0 Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. 2023-07-21 19:17:59
Martin Larralde
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