| Name | Version | Summary | date | 
        
        
            
                | molcraft | 
                0.1.0a25 | 
                Graph Neural Networks for Molecular Machine Learning | 
                2025-11-04 06:50:29 | 
            
        
            
                | ncbi-tree | 
                1.1.0 | 
                ncbi-tree is an open source, cross-platform command-line tool for downloading the latest NCBI taxonomy database and converting it to Newick tree format (.tre), with optional plain-text visualization (.txt) | 
                2025-10-25 18:16:53 | 
            
        
            
                | sirnaforge | 
                0.2.1 | 
                siRNAforge - Multi-species gene to siRNA design, off-target prediction, and ranking. Comprehensive siRNA design toolkit for gene silencing | 
                2025-10-24 20:27:51 | 
            
        
            
                | spymot | 
                2.1.4.dev0 | 
                Advanced Protein Motif Detection with AlphaFold Structural Validation | 
                2025-10-10 19:42:07 | 
            
        
            
                | PteraSoftware | 
                3.2.0 | 
                This is an open-source, unsteady aerodynamics solver for analyzing flapping-wing flight. | 
                2025-09-02 03:52:20 | 
            
        
            
                | molgraph | 
                0.10.0 | 
                Graph Neural Networks for Molecular Machine Learning | 
                2025-08-30 14:28:36 | 
            
        
            
                | physicell-settings | 
                0.4.4 | 
                User-friendly Python package for generating PhysiCell_settings.xml configuration files | 
                2025-08-08 20:50:36 | 
            
        
            
                | pipeGEM | 
                0.1.1 | 
                Processing and integrating data with genome-scale metabolic models (GEM) | 
                2025-07-28 14:18:32 | 
            
        
            
                | gspa | 
                1.1 | 
                Gene Signal Pattern Analysis | 
                2024-06-24 20:30:12 |