| Name | Version | Summary | date |
| cogent3 |
2025.7.10a4 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-07-25 07:19:38 |
| phylim |
2025.7.24 |
A library for checking the limits of phylogenetic tree estimation. |
2025-07-24 00:24:08 |
| ndex2 |
3.11.0 |
Nice CX Python includes a client and a data model. |
2025-07-23 16:55:59 |
| mutation-motif |
2025.7.17 |
mutation_motif, software for analyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed/27974498 |
2025-07-16 23:25:09 |
| sbol3 |
1.2.0.post0 |
Python implementation of SBOL 3 standard |
2025-02-21 20:52:55 |
| plasmid-assessor |
0.2.0 |
Plasmid assessment for Golden Gate cloning |
2025-01-28 18:56:06 |
| dnachisel |
3.2.13 |
Optimize DNA sequences under constraints. |
2025-01-27 17:07:52 |
| biothings-client |
0.4.0 |
Python Client for BioThings API services. |
2025-01-10 22:09:45 |
| diverse-seq |
2024.12.26a1 |
diverse_seq: a tool for sampling diverse biological sequences |
2024-12-26 03:33:53 |
| copasi-basico |
0.82 |
Simplified COPASI interface for python |
2024-12-20 09:43:50 |
| vivarium-core |
1.6.5 |
Engine for composing and simulating computational biology models with the Vivarium interface. |
2024-12-03 21:49:29 |
| oligopool |
2024.12.2 |
Oligopool Calculator - Automated design and analysis of oligopool libraries |
2024-12-02 18:43:37 |
| xeno-canto-utils-nbm |
0.0.19 |
Utility functions to interact with the Xeno Canto API with python |
2024-12-01 14:27:13 |
| SuchTree |
1.2 |
A python library for doing fast, thread-safe computations on phylogenetic trees |
2024-11-20 09:07:45 |
| nrpcalc |
1.7.5 |
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems |
2024-11-04 22:16:48 |
| bonesis |
0.6.7 |
Synthesis of Most Permissive Boolean Networks |
2024-10-22 20:46:23 |
| msms-binary |
2.6.1.1 |
None |
2024-10-19 02:07:21 |
| apbs-binary |
3.4.1.1 |
Install apbs with pip |
2024-10-19 01:22:03 |
| reduce-binary |
4.14.0.1 |
Install reduce with pip |
2024-10-18 11:02:03 |
| MethSCAn |
1.1.0 |
a command line tool for Single-Cell Analysis of Methylation data |
2024-10-07 14:00:07 |