| Name | Version | Summary | date |
| opr |
0.6 |
OPR: Optimized Primer |
2025-11-02 13:44:52 |
| cogent3 |
2025.9.8a7 |
COmparative GENomics Toolkit 3: genomic sequence analysis within notebooks or on compute systems with 1000s of CPUs. |
2025-10-28 18:35:52 |
| biothings |
1.0.2 |
a toolkit for building high-performance data & knowledge APIs in biology |
2025-10-15 20:30:16 |
| diverse-seq |
2025.9.11 |
diverse_seq: a tool for sampling diverse biological sequences |
2025-09-10 22:52:40 |
| phylim |
2025.8.27 |
A library for checking the limits of phylogenetic tree estimation. |
2025-08-27 06:25:34 |
| ginsim |
0.4.6 |
Python interface to GINsim and BioLQM API |
2025-08-19 22:40:34 |
| mdeq |
2025.6.30 |
mdeq: mutation disequilibrium analysis tools. |
2025-08-13 07:11:57 |
| ensembl-tui |
0.4.3 |
Ensembl terminal user interface tools |
2025-08-12 05:30:48 |
| copasi-basico |
0.85 |
Simplified COPASI interface for python |
2025-07-30 17:16:02 |
| ndex2 |
3.11.0 |
Nice CX Python includes a client and a data model. |
2025-07-23 16:55:59 |
| mutation-motif |
2025.7.17 |
mutation_motif, software for analyses of point mutations, see https://www.ncbi.nlm.nih.gov/pubmed/27974498 |
2025-07-16 23:25:09 |
| sbol3 |
1.2.0.post0 |
Python implementation of SBOL 3 standard |
2025-02-21 20:52:55 |
| plasmid-assessor |
0.2.0 |
Plasmid assessment for Golden Gate cloning |
2025-01-28 18:56:06 |
| dnachisel |
3.2.13 |
Optimize DNA sequences under constraints. |
2025-01-27 17:07:52 |
| biothings-client |
0.4.0 |
Python Client for BioThings API services. |
2025-01-10 22:09:45 |
| vivarium-core |
1.6.5 |
Engine for composing and simulating computational biology models with the Vivarium interface. |
2024-12-03 21:49:29 |
| oligopool |
2024.12.2 |
Oligopool Calculator - Automated design and analysis of oligopool libraries |
2024-12-02 18:43:37 |
| xeno-canto-utils-nbm |
0.0.19 |
Utility functions to interact with the Xeno Canto API with python |
2024-12-01 14:27:13 |
| SuchTree |
1.2 |
A python library for doing fast, thread-safe computations on phylogenetic trees |
2024-11-20 09:07:45 |
| nrpcalc |
1.7.5 |
Non-Repetitive Parts Calculator - Automated design and discovery of non-repetitive genetic parts for engineering stable genetic systems |
2024-11-04 22:16:48 |