| Name | Version | Summary | date |
| ngs-ai-agent |
1.0.0 |
AI-powered automated NGS analysis pipeline |
2025-10-14 22:40:46 |
| cutseq |
0.0.68 |
Automatically cut adapter / barcode / UMI from NGS data |
2025-09-05 17:24:56 |
| PyMaSC |
1.0.0 |
Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq. |
2025-08-15 15:19:36 |
| pasio |
1.1.3 |
Pasio is a tool for segmentation and denosing DNA coverage profiles coming from high-throughput sequencing data. |
2024-12-30 04:48:51 |
| ngs-test-utils |
0.0.6 |
Utilities for generation of synthetic NGS files |
2024-11-04 12:02:05 |
| fdstools |
2.1.1 |
Forensic DNA Sequencing Tools |
2024-07-02 18:45:44 |
| smallgenomeutilities |
0.4.1 |
A collection of scripts that are useful for dealing with viral RNA NGS data. |
2024-05-27 22:02:59 |
| prophyle |
0.3.3.2 |
ProPhyle metagenomic classifier |
2024-04-21 15:31:41 |
| anacore |
3.1.0 |
Libraries for managing standard file formats and objects from NGS. |
2024-03-20 09:04:17 |
| bacpage |
2024.3.8 |
An easy-to-use pipeline for the assembly and analysis of bacterial genomes |
2024-03-11 12:53:35 |
| ngs-analysis |
0.0.6 |
Analyze deep sequencing of complex libraries |
2024-02-09 15:33:49 |
| yacman |
0.9.3 |
A standardized configuration object for reference genome assemblies |
2024-02-01 21:36:51 |
| sequana-variant-calling |
1.2.0 |
A multi-sample variant calling pipeline |
2024-01-31 08:46:23 |
| massgenotyping |
0.2.2 |
Python package for microsatellite genotyping from amplicon sequencing data |
2024-01-12 03:39:47 |
| strnaming |
1.2.0 |
STRNaming STR Sequence Nomenclature |
2024-01-11 17:15:30 |
| sequana-bioconvert |
1.1.0 |
description: convert NGS format from one to another using bioconvert |
2023-12-18 08:51:03 |
| sequana-depletion |
0.3.0 |
A pipeline to deplete reads from a given reference |
2023-12-17 09:17:42 |
| sequana-multitax |
0.12.1 |
A multi-sample and multi-databases taxonomic analysis using Kraken |
2023-12-04 23:52:30 |
| sequana-denovo |
0.10.0 |
Multi-sample denovo assembly of FastQ sequences (short read) |
2023-11-30 15:31:20 |
| markmeld |
0.3.0 |
Markmeld is a markup melder that combines structured yaml or markdown data into templated markdown output using jinja2. |
2023-11-07 02:41:50 |