| Name | Version | Summary | date |
| sequana-fastqc |
1.8.1 |
A multi-sample fastqc pipeline from Sequana project |
2023-12-29 13:53:51 |
| sequana-bioconvert |
1.1.0 |
description: convert NGS format from one to another using bioconvert |
2023-12-18 08:51:03 |
| sequana-depletion |
0.3.0 |
A pipeline to deplete reads from a given reference |
2023-12-17 09:17:42 |
| sequana-multitax |
0.12.1 |
A multi-sample and multi-databases taxonomic analysis using Kraken |
2023-12-04 23:52:30 |
| sequana-denovo |
0.10.0 |
Multi-sample denovo assembly of FastQ sequences (short read) |
2023-11-30 15:31:20 |
| geofetch |
0.12.5 |
Downloads data and metadata from GEO and SRA and creates standard PEPs. |
2023-11-29 18:12:18 |
| eido |
0.2.2 |
A project metadata validator |
2023-11-16 21:28:43 |
| markmeld |
0.3.0 |
Markmeld is a markup melder that combines structured yaml or markdown data into templated markdown output using jinja2. |
2023-11-07 02:41:50 |
| fastqwiper |
2023.2.82 |
An ensamble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and fix reads interleaving |
2023-10-30 19:59:28 |
| smallgenomeutilities |
0.4.0 |
A collection of scripts that are useful for dealing with viral RNA NGS data. |
2023-08-03 01:44:23 |
| bioconvert |
1.1.1 |
convert between bioinformatics formats |
2023-07-18 05:58:15 |
| vcftoolz |
1.2.3 |
Tools for working with Variant Call Format files. |
2023-06-02 03:25:43 |
| bio-aid |
0.3.0 |
Genetic Analysis Tools |
2023-05-23 20:58:42 |
| iridauploader |
0.9.2 |
IRIDA uploader: upload NGS data to IRIDA system |
2023-05-16 14:35:46 |
| counhto |
1.1.0 |
Python package for generating and demultiplexing hash tag oligo count matrices from cellranger output |
2023-04-07 16:19:29 |
| zarp |
0.1.1 |
User-friendly command-line interface for the ZARP RNA-Seq analysis pipeline |
2022-12-02 02:26:59 |
| s-rna-tools |
0.0.3 |
Tools for handling Small RNA sequences. |
2022-11-30 14:43:19 |
| refgenie |
0.12.1 |
Refgenie creates a standardized folder structure for reference genome files and indexes. You can download pre-built genomes or build your own for any fasta file |
2021-11-04 16:58:07 |