| Name | Version | Summary | date |
| lncrnapi |
1.2 |
A CLI tool for predicting lncRNA–Protein interactions using transformer embeddings and CatBoost |
2025-11-01 11:08:42 |
| pymolfold |
0.2.11 |
Protein structure prediction in PyMOL |
2025-10-27 02:28:49 |
| protein-mcp |
0.1.5 |
FastMCP-based protein data access tools for bioinformatics research |
2025-10-24 09:25:13 |
| foldkit |
0.1.1 |
Toolkit for working with AlphaFold3 results and confidence metadata |
2025-10-23 14:52:16 |
| pixelgen-pixelator |
0.22.0 |
A command-line tool and library to process and analyze data generated from technologies from Pixelgen Technologies. |
2025-10-23 12:36:02 |
| boltz2-python-client |
0.3.0 |
Python client for Boltz-2 protein structure prediction API with covalent complex and multi-endpoint support |
2025-09-16 00:10:13 |
| ipsae |
1.0.0 |
Calculate ipSAE scores for protein-protein interactions in AlphaFold2 and AlphaFold3 models |
2025-09-15 18:11:53 |
| pypef |
0.4.3 |
A tool for performing data-driven protein engineering by building machine learning models from protein variant fitness data. |
2025-08-31 06:46:12 |
| ProDy |
2.6.1 |
A Python Package for Protein Dynamics Analysis |
2025-08-19 18:18:12 |
| pepe-cli |
1.0.5 |
Pipeline for Easy Protein Embedding - Extract embeddings and attention matrices from protein sequences |
2025-07-21 13:29:32 |
| PDB-score |
1.1.2 |
A tool to massively calculate protein scores using PDB files. |
2025-01-04 14:26:14 |
| ProteinStructureVisualizer |
1.0.6 |
A tool for 3D visualization of monomeric protein structures from PDB files |
2024-12-10 02:38:21 |
| icn3dpy |
3.39.0 |
An IPython interface for embedding iCn3D viewer |
2024-12-03 17:33:08 |
| uniprot-lb |
0.1.1 |
Parses uniprot entries (from uniprot files) and creates Uniprot objets |
2024-11-26 11:39:54 |
| biobb-godmd |
5.0.0 |
Biobb_godmd is a BioBB category for GOdMD tool (protein conformational transitions). |
2024-11-19 14:41:02 |
| py3Dmol |
2.4.2 |
An IPython interface for embedding 3Dmol.js views in Jupyter notebooks |
2024-11-08 22:19:23 |
| biobb-flexserv |
5.0.0 |
biobb_flexserv is a BioBB category for biomolecular flexibility studies on protein 3D structures. |
2024-10-23 15:55:59 |
| biobb-flexdyn |
5.0.0 |
biobb_flexdyn is a BioBB category for studies on the conformational landscape of native proteins. |
2024-10-23 15:23:23 |
| ppss |
0.2.0 |
Python Protein Subunit Syntax |
2024-10-18 14:17:11 |
| progres |
0.2.7 |
Fast protein structure searching using structure graph embeddings |
2024-09-02 11:48:11 |