| Name | Version | Summary | date |
| calisp |
3.1.2 |
Isotope analysis of proteomics data |
2025-03-31 14:41:31 |
| ccompass |
2.0.0a1 |
C-COMPASS (Cellular COMPartmentclASSifier) is an advanced open-source software tool designed for the quantitative analysis of fractionated proteomics samples. |
2025-02-20 10:58:31 |
| im2deep |
1.0.1 |
Framework for prediction of collisional cross-section of peptides. |
2025-02-18 09:12:32 |
| proteobench |
0.6.0 |
ProteoBench compares the outputs of mass spectrometry-based proteomics data analysis pipelines |
2025-01-31 13:53:03 |
| psm-utils |
1.3.0 |
Common utilities for parsing and handling peptide-spectrum matches and search engine results. |
2025-01-20 10:30:51 |
| tmtcrunch |
2024.12.18 |
Python utility for TMT-based proteomics |
2024-12-17 21:25:41 |
| omicscope |
1.4.6 |
OmicScope: from quantitative proteomics to systems biology. |
2024-12-05 11:42:58 |
| AMPcombi |
2.0.1 |
A parsing tool for AMP tools. |
2024-11-18 07:48:35 |
| xi-mzidentml-converter |
0.3.5 |
xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/latest/index.html) to parse mzIdentML files (v1.2.0) and extract crosslink information. Results are written to a relational database (PostgreSQL or SQLite) using sqlalchemy. |
2024-11-07 14:51:27 |
| xiutilities |
1.2.5 |
A collection of corss-link mass spectrometry tools. |
2024-11-04 13:30:00 |
| sdrf-pipelines |
0.0.31 |
Translate, convert SDRF to configuration pipelines |
2024-10-12 06:04:03 |
| xirescore |
1.0.0a13 |
A corss-link mass spectrometry rescoring tool |
2024-10-05 11:01:48 |
| varpepdb |
1.0.3 |
Generate reference database of variant peptides for peptide spectrum matching |
2024-09-07 05:11:18 |
| pmultiqc |
0.0.25 |
Python package for quality control of proteomics datasets, based on multiqc package |
2024-08-02 13:49:23 |
| cptac |
1.5.14 |
Python packaging for CPTAC data |
2024-06-06 18:29:01 |
| quantmsio |
0.0.3 |
Convert multiple files into quantms.io format |
2024-04-14 07:20:59 |
| multiplierz |
2.2.2 |
The MultiplierZ proteomics package |
2024-04-13 01:19:59 |
| ms2pip |
3.13.0 |
MS²PIP: MS² Peak Intensity Prediction |
2024-03-05 16:39:36 |
| profasta |
0.0.4 |
A Python library for working with protein containing FASTA files. |
2024-02-16 12:18:34 |
| protmapper |
0.0.29 |
Map protein sites to human reference sequence. |
2024-01-19 04:49:14 |