CIRIquant

Name	CIRIquant JSON
Version	1.1.3 JSON
	download
home_page	https://github.com/bioinfo-biols/CIRIquant
Summary	circular RNA quantification pipeline
upload_time	2023-11-08 06:17:56
maintainer	Jinyang Zhang
docs_url	None
author	Jinyang Zhang
requires_python
license	MIT
keywords	circrna
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI
coveralls test coverage	No coveralls.

            ## CIRIquant

[![Build Status](https://travis-ci.com/bioinfo-biols/CIRIquant.svg?branch=master)](https://travis-ci.com/bioinfo-biols/CIRIquant)
![GitHub release (latest by date)](https://img.shields.io/github/v/release/bioinfo-biols/CIRIquant)
[![The MIT License](https://img.shields.io/badge/license-MIT-orange.svg)](https://github.com/bioinfo-biols/CIRIquant/blob/master/LICENSE)
![GitHub All Releases](https://img.shields.io/github/downloads/bioinfo-biols/CIRIquant/total)
![SourceForge](https://img.shields.io/sourceforge/dm/ciri/CIRIquant)
[![Documentation Status](https://readthedocs.org/projects/ciri-cookbook/badge/?version=latest)](https://ciri-cookbook.readthedocs.io/en/latest/?badge=latest)

CIRIquant is a comprehensive analysis pipeline for circRNA detection and quantification in RNA-Seq data

### Documentation

Documentation is available online at [https://ciri-cookbook.readthedocs.io/en/latest/](https://ciri-cookbook.readthedocs.io/en/latest/CIRIquant_0_home.html#)

### Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

### Release Notes

- Version 1.1: Added support for stranded library and GFF3 format input.
- Version 1.0: The first released version of CIRIquant.

### License

The code is released under the MIT License. See the `LICENSE` file for more detail.

### Citing CIRIquant

- Zhang, J., Chen, S., Yang, J. et al. Accurate quantification of circular RNAs identifies extensive circular isoform switching events. Nat Commun 11, 90 (2020) [doi:10.1038/s41467-019-13840-9](https://doi.org/10.1038/s41467-019-13840-9)



            

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