# MethylVerse
[](https://travis-ci.org/kylessmith/MethylVerse) [](https://badge.fury.io/py/MethylVerse)
[](https://www.buymeacoffee.com/kylessmith)
<img src="MethylVerse_logo.png" width="300" />
Library to work with WGBS, EM-seq, and/or methylation array data in one interface.
For full usage and installation [documentation][methylverse_docs]
## Install
If you dont already have numpy and scipy installed, it is best to download
`Anaconda`, a python distribution that has them included.
```
https://continuum.io/downloads
```
Dependencies can be installed by:
```
pip install -r requirements.txt
```
PyPI install, presuming you have all its requirements installed:
```
pip install methylverse
```
## Quick start
Test numpy random integers:
```python
import MethylVerse as mv
beta_values = mv.core.read_methylation("path/to/methylation")
```
Run the M-PACT classifier from the cammandline
```
python -m MethylVerse MPACT example.bedgraph --impute --regress --call_cnvs --verbose
```
[methylverse_docs]: https://www.biosciencestack.com/static/MethylVerse/docs/index.html
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