# PartSegCore_compiled_backend
[](https://github.com/4DNucleome/PartSegCore-compiled-backend/actions/workflows/wheels.yml)
[](https://pypi.org/project/PartSegCore-compiled-backend/)
[](https://anaconda.org/conda-forge/partsegcore-compiled-backend)
[](https://pypi.org/project/partsegcore-compiled-backend)
[](https://partsegcore-compiled-backend.readthedocs.io/en/stable/)
[](https://doi.org/10.1186/s12859-021-03984-1)
This is a package with all cython/c++ backend for ParSeg
Current release extracted from PartSegCore module to avoid building multiple wheels
for the main package and speedup tests.
This package requires `libomp` for build.
On linux it can be installed with `apt install libomp-dev` or `yum install libomp-devel`.
On macOS it can be installed with `brew install libomp`.
As `clang` version created on macOS do not have native openmp `brew` do
not set `libomp` as default visible.
If you install `libomp` with `brew` and want to build package
from source you need to set `OMP` variable to `libomp` location.
For example:
```bash
export OMP="$(brew --prefix libomp)"
pip install .
```
As currently there is no wheel for macOS ARM64
it is required to build package from source.
## Cite as
Bokota, G., Sroka, J., Basu, S. et al. PartSeg: a tool for quantitative feature extraction
from 3D microscopy images for dummies. BMC Bioinformatics 22, 72 (2021).
[https://doi.org/10.1186/s12859-021-03984-1](https://doi.org/10.1186/s12859-021-03984-1)
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"description": "# PartSegCore_compiled_backend\n\n\n[](https://github.com/4DNucleome/PartSegCore-compiled-backend/actions/workflows/wheels.yml)\n[](https://pypi.org/project/PartSegCore-compiled-backend/)\n[](https://anaconda.org/conda-forge/partsegcore-compiled-backend)\n[](https://pypi.org/project/partsegcore-compiled-backend)\n[](https://partsegcore-compiled-backend.readthedocs.io/en/stable/)\n[](https://doi.org/10.1186/s12859-021-03984-1)\n\nThis is a package with all cython/c++ backend for ParSeg\n\nCurrent release extracted from PartSegCore module to avoid building multiple wheels\nfor the main package and speedup tests.\n\nThis package requires `libomp` for build.\nOn linux it can be installed with `apt install libomp-dev` or `yum install libomp-devel`.\nOn macOS it can be installed with `brew install libomp`.\n\nAs `clang` version created on macOS do not have native openmp `brew` do\nnot set `libomp` as default visible.\nIf you install `libomp` with `brew` and want to build package\nfrom source you need to set `OMP` variable to `libomp` location.\n\nFor example:\n\n```bash\nexport OMP=\"$(brew --prefix libomp)\"\npip install .\n```\n\nAs currently there is no wheel for macOS ARM64\nit is required to build package from source.\n\n## Cite as\n\nBokota, G., Sroka, J., Basu, S. et al. PartSeg: a tool for quantitative feature extraction\nfrom 3D microscopy images for dummies. BMC Bioinformatics 22, 72 (2021).\n[https://doi.org/10.1186/s12859-021-03984-1](https://doi.org/10.1186/s12859-021-03984-1)\n",
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