NOTE
-----
Please note that this package is currently beta. Things may break unexpectedly. Most functions writing to Analysis Studio format have been disabled so I don't see how this package could break your existing data anymore.
Anasys Python Tools
===================
Anasys Python Tools is a python package for working with files generated by Anasys Instruments' (now Bruker) Analysis Studio software. Anasys Python Tools was originally developed by Cody Schindler from Anasys.
Basic Usage
-----------
.. code-block:: python
import anasyspythontools as anasys
# Read your Analysis Studio file
f = anasys.read("afmdata.axz")
# Grab all the height map data from the file
heightmaps = f.HeightMaps
# Show off your beautiful images
heightmaps['Height 1'].show()
# Unsure what the data looks like? Try:
dir(f) # Displays user-accessible data
dir(f.HeightMaps)
More useage information can be found in the `examples` folder.
Features
--------
- Read files with .axz, .axd, file extensions
- Extract AFM spectral and height map images as numpy arrays
- Export spectra and images to xarray type
- Quickly display and save your data
- Use your data with popular Python data libraries and applications (Pandas, Orange3, Jupyter, etc.)
- Work with your data when you're away from your instruments
- Evaluate your data in a trasparent and flexible way
Installation
------------
**From pip**
.. code-block:: bash
pip install anasyspythontools
**From github**
Install the latest version:
.. code-block:: bash
pip install git+https://github.com/GeorgRamer/anasys-python-tools.git
or a specific branch:
.. code-block:: bash
pip install git+https://github.com/GeorgRamer/anasys-python-tools.git@<branchname>
Contribute
----------
- Feel free to fork and hack away!
- If you have a feature you'd like to see, please open an Issue.
Support
-------
This section previously said:
If you are having issues, please let us know.
Email Cody directly at cschindler@anasysinstruments.com
Since Cody appears to have stopped working on this, please raise issues in this fork or email Georg at georg.ramer@tuwien.ac.at
License
-------
The project is licensed under the MIT license.
Each .py file in this document has a header stating:
.. code-block:: python
# Copyright 2017 Cody Schindler <cschindler@anasysinstruments.com>
#
# This program is the property of Anasys Instruments, and may not be
# redistributed or modified without explict permission of the author.
To my understanding the MIT license constitutes an "explicit permission" to redistribute and modify. To be on the safe side, I (GeorgRamer) have repeatedly, over a span of several years tried to get confirmation on that from Bruker. I never got a definite answer.
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