| Name | atlasapprox JSON |
| Version |
0.2.4
JSON |
| download |
| home_page | https://apidocs.atlasapprox.org |
| Summary | Cell atlas approximations, Python API |
| upload_time | 2024-09-19 09:36:18 |
| maintainer | None |
| docs_url | None |
| author | Fabio Zanini |
| requires_python | >=3.8 |
| license | Copyright 2024 Fabio Zanini Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
| keywords |
single cell
cell atlas
omics
biology
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
[](https://apidocs.atlasapprox.org/en/latest/?badge=latest)
Python interface to cell atlas approximations
=============================================
Cell atlases such as Tabula Muris and Tabula Sapiens are multi-organ single cell omics data sets describing entire organisms. A cell atlas approximation is a lossy and lightweight compression of a cell atlas that can be streamed via the internet.
This project enables biologists, doctors, and data scientist to quickly find answers for questions such as:
- *What is the expression of a specific gene in human lung?*
- *What are the marker genes of a specific cell type in mouse pancreas*?
- *What fraction of cells (of a specific type) express a gene of interest?*
In addition to this interface, these questions can be asked in R or in a language agnostic manner using the REST API. See the documentation for more info.
**Documentation**: https://atlasapprox.readthedocs.io/en/latest/python/index.html
**Development**: https://github.com/fabilab/cell_atlas_approximations_API
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