attribute-standardizer

Name	attribute-standardizer JSON
Version	0.1.1 JSON
	download
home_page	https://github.com/databio/bedmess/
Summary	BEDMess attribute standardizer for metadata attribute standardization
upload_time	2024-07-30 18:01:13
maintainer	None
docs_url	None
author	Saanika Tambe
requires_python	None
license	BSD2
keywords	project metadata bioinformatics
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # bedmess

bedmess is a tool used to standardize genomics/epigenomics metadata based on a schema chosen by the user ( eg. ENCODE, FAIRTRACKS).


Presently, bedmess only provides standardization according to the ENCODE schema.


You can install the `attribute_standardizer` by:

```
pip install attribute-standardizer

```

## Usage

Using Python, this is how you can run `attribute_standardizer` :


```
from attribute_standardizer.attribute_standardizer import attr_standardizer

attr_standardizer(pep=/path/to/pep, schema="ENCODE")
```

You can use the format provided in the `trial.py` script in this repository as a reference. 

            

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