| Name | bgen-reader JSON |
| Version |
4.0.9
JSON |
| download |
| home_page | None |
| Summary | Bgen file format reader |
| upload_time | 2024-10-28 12:02:36 |
| maintainer | None |
| docs_url | None |
| author | Danilo Horta |
| requires_python | <4.0,>=3.10 |
| license | MIT |
| keywords |
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| VCS |
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| bugtrack_url |
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| requirements |
No requirements were recorded.
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| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
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# bgen-reader
A [bgen file format](http://www.well.ox.ac.uk/~gav/bgen_format/) reader.
Bgen is a file format for storing large genetic datasets.
It supports both unphased genotypes and phased haplotype data with variable
ploidy and number of alleles. It was designed to provides a compact data
representation without sacrificing variant access performance.
This python package is a wrapper around the [bgen library](https://github.com/limix/bgen),
a low-memory footprint reader that efficiently reads bgen files.
It fully supports the bgen format specifications: 1.2 and 1.3;
as well as their optional compressed formats.
## Install
It can be installed via [conda](https://conda.io/docs/)
```bash
conda install -c conda-forge bgen-reader
```
Or via pip
```bash
pip install bgen-reader
```
## Documentation
Please, refer to [https://bgen-reader.readthedocs.io](https://bgen-reader.readthedocs.io).
## Troubleshooting
### fatal error: bgen.h: No such file or directory
This means that bgen C library is not installed (or could not be found). Please,
follow the instructions in <https://github.com/limix/bgen> to install it, and try
installing bgen-reader again.
## Problems
If you encounter any issue, please, [submit it](https://github.com/limix/bgen-reader-py/issues/new).
## Authors
* [Danilo Horta](https://github.com/horta)
## License
This project is licensed under the [MIT License](https://raw.githubusercontent.com/limix/bgen-reader-py/main/LICENSE.md).
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