bgzip

Name	bgzip JSON
Version	0.5.0 JSON
	download
home_page	https://github.com/DataBiosphere/bgzip.git
Summary	Utilities working with blocked gzip streams.
upload_time	2024-06-30 20:58:41
maintainer	None
docs_url	None
author	Brian Hannafious
requires_python	None
license	MIT
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI
coveralls test coverage	No coveralls.

            # bgzip: block gzip streams
_bgzip_ provides streams for block gzip files.

Cython is used under the hood to bypass Python's GIL and provide fast, parallelized inflation/deflation.

```
with open("my_bgzipped_file.gz", "rb") as raw:
	with bgzip.BGZipReader(raw) as fh:
		data = fh.read(number_of_bytes)

with open("my_bgzipped_file.gz", "wb") as raw:
	with bgzip.BGZipWriter(raw) as fh:
		fh.write(my_data)
```

## Installation

```
pip install bgzip
```

#### Requirements
bgzip requires [openmp](https://github.com/llvm/llvm-project/tree/master/openmp). On MacOS
it can be installed with:
```
brew install llvm
```

## Links
Project home page [GitHub](https://github.com/DataBiosphere/bgzip)  
Package distribution [PyPI](https://pypi.org/project/bgzip/)

### Bugs
Please report bugs, issues, feature requests, etc. on [GitHub](https://github.com/DataBiosphere/bgzip).

![](https://travis-ci.org/DataBiosphere/bgzip.svg?branch=master) ![](https://badge.fury.io/py/bgzip.svg)

## Credits
getm was created by [Brian Hannafious](https://github.com/xbrianh) at the
[UCSC Genomics Institute](https://ucscgenomics.soe.ucsc.edu/).

            

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