bigraph-schema


Namebigraph-schema JSON
Version 0.0.49 PyPI version JSON
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home_pagehttps://github.com/vivarium-collective/bigraph-schema
SummaryA serializable type schema for compositional systems biology
upload_time2024-12-21 01:56:47
maintainerNone
docs_urlNone
authorEran Agmon, Ryan Spangler
requires_python>=3.7
licenseNone
keywords
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requirements No requirements were recorded.
Travis-CI No Travis.
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            # Bigraph-schema

[![PyPI version](https://img.shields.io/pypi/v/bigraph-schema.svg)](https://pypi.org/project/bigraph-schema/)
[![Tutorial](https://img.shields.io/badge/GitHub%20Pages-Tutorial-brightgreen)](https://vivarium-collective.github.io/bigraph-schema/notebooks/demo.html)

Welcome to `bigraph-schema` – a library providing a serializable type schema for compositional systems biology 
simulations. This library is an integral component of the broader Process Bigraph project, which seeks to create an 
innovative framework for representing, simulating, and analyzing complex biological systems.

The goal of `bigraph-schema` is to support interoperability and extensibility across compositional modeling, 
facilitating seamless integration with existing and future modeling platforms. This is achieved by establishing a 
standardized and serializable schema for the complex, hierarchical, and multiscale nature of biological systems.

## Installation

To install `bigraph-schema`, you can use pip:

```console
pip install bigraph-schema
```

## Getting Started

To get started with bigraph-schema, check out our resources:

* [Type System Overview](https://vivarium-collective.github.io/bigraph-schema/notebooks/core.html): A tutorial demonstrating the functionality of bigraph-schema's type system, "core".
* [Bigraph Schema Basics Tutorial](https://vivarium-collective.github.io/bigraph-viz/notebooks/basics.html): A  tutorial covering the essential aspects of the bigraph-schema library. 
This resource will guide you through the core concepts and methods, helping you to master the basic operations.

## License

Bigraph-schema is open-source software released under the [Apache 2 License](https://github.com/vivarium-collective/bigraph-schema/blob/main/LICENSE).



            

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