# BioAT
the Bioinformatic Analysis Tools
## About bioat
Bref: <u>**bioat**, a python **package** & **command line toolkit** for Bioinformatics and data science!</u>
Home: https://github.com/hermanzhaozzzz/bioat
License: Apache-2.0
| Name | Downloads | Version | Platforms | Test |
| --- | --- | --- | --- | --- |
|[](https://anaconda.org/conda-forge/bioat) | [](https://anaconda.org/conda-forge/bioat) | [](https://anaconda.org/conda-forge/bioat) | [](https://anaconda.org/conda-forge/bioat) | [](https://dev.azure.com/conda-forge/feedstock-builds/_build/latest?definitionId=23719&branchName=main) |
## About author
Name: [赵华男 | Huanan Herman Zhao](https://scholar.google.com/citations?user=ojSVoWQAAAAJ&hl=en) | EMail: hermanzhaozzzz AT gmail.com | [Zhihu](https://www.zhihu.com/people/hymanzhaozzzz) | [BLOG](http://zhaohuanan.cc)
## Installation
```shell
# supported platform: Linux / MacOS (intel & arm64) / Windows
pip install --upgrade bioat
# use conda
conda install -c conda-forge bioat
```
## Usage
```shell
# list commands
bioat list
# check version
bioat version
# check information about bioat
bioat about
# example usage
bioat bam remove_clip --help
samtools view -h test_sorted_n.bam | bioat bam remove_clip | tail
```
[circos plot](docs/demo_circos-plot.ipynb)
## Doc
See [Doc](https://bioat.readthedocs.io/en/latest/)
## Citation
[](https://doi.org/10.5281/zenodo.15093444)
```latex
@software{huanan_herman_zhao_2025_15093444,
author = {Huanan Herman Zhao},
title = {BioAT, a python package \& command line toolkit for
bioinformatics and data science
},
month = mar,
year = 2025,
publisher = {Zenodo},
doi = {10.5281/zenodo.15093444},
url = {https://doi.org/10.5281/zenodo.15093444},
swhid = {swh:1:dir:19b60f4b0b93f490798727c05ab41a3222b555a1
;origin=https://doi.org/10.5281/zenodo.15093443;vi
sit=swh:1:snp:793130e9e84df8cf427ab2b6a69c0dc77146
1e6a;anchor=swh:1:rel:dc0fa360dfdaf99222cf7db99e8e
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},
}
```
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