| Name | biobrary JSON |
| Version |
0.1.5
JSON |
| download |
| home_page | None |
| Summary | A library for biological computing works |
| upload_time | 2024-05-11 02:29:21 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.7 |
| license | MIT License Copyright (c) 2019 Hailing Fang Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE. |
| keywords |
biobrary
bioparse
tree
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# Biobrary
## Introduction
Biobrary is a python library, which contain data and methods for biological computation.
## Requirement
* ete3
pyqt5 is needed by ete3. you maybe need install it manually.
## Install
* using pip
`pip install biobrary --user`
* manally install
`git clone https://github.com/benjaminfang/biobrary.git`
`cd biobrary`
`mv biobrary $PYTHONPATH`
where PYTHONPATH is python library searching path.
## Usage
```
import biobrary
dir(biobrary)
```
## Data and Method
* bioparse
* FASTA
class for fasta file.
* GTF
class for gtf file.
* GFF
class for gff file.
* biocondon
* amino_acids_mw
* tree
* CircleNode
class for phylogenic tree traverse and operations. And divide tree to circle node according
to phylogenic distance.
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