| Name | biolearn JSON |
| Version |
0.4.2
JSON |
| download |
| home_page | None |
| Summary | Machine learning for biomarkers computing |
| upload_time | 2024-05-04 17:25:31 |
| maintainer | None |
| docs_url | None |
| author | Biolearn developers |
| requires_python | >=3.10 |
| license | new BSD |
| keywords |
biomarker
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
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| coveralls test coverage |
No coveralls.
|
Biolearn
========
Biolearn enables easy and versatile analyses of biomarkers of aging data. It provides tools to easily load data from publicly available sources like the
`Gene Expression Omnibus <https://www.ncbi.nlm.nih.gov/geo/>`_, `National Health and Nutrition Examimation Survey <https://www.cdc.gov/nchs/nhanes/index.htm>`_,
and the `Framingham Heart Study <https://www.framinghamheartstudy.org/>`_. Biolearn also contains reference implemenations for common aging clock such at the
Horvath clock, DunedinPACE and many others that can easily be run in only a few lines of code. You can read more about it in our `paper <https://www.biorxiv.org/content/10.1101/2023.12.02.569722v2>`_.
.. warning::
This is a prerelease version of the biolearn library. There may be bugs and interfaces are subject to change.
Important links
===============
- Source code: https://github.com/bio-learn/biolearn/
- Documentation Homepage: https://bio-learn.github.io/
Requirements
============
Python 3.10+
Install
=======
Install biolearn using pip.
.. code-block:: bash
pip install biolearn
To verify the library was installed correctly open python or a jupyter notebook and run:
.. code-block:: python
from biolearn.data_library import DataLibrary
If it executes with no errors then the library is installed. To get started check out `some code examples <https://bio-learn.github.io/auto_examples/index.html>`_
Discord server
==============
The biolearn team has a `discord server <https://discord.gg/wZH85WRTxN>`_ to answer questions,
discuss feature requests, or have any biolearn related discussions.
Issues
======
If you find any bugs with biolearn please create a Github issue including how we can replicate the issue and the expected vs actual behavior.
Contributing
============
Detailed instructions on developer setup and how to contribute are available `in the repo <https://github.com/bio-learn/biolearn/blob/master/DEVELOPMENT.md>`_
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