bionty

Name	bionty JSON
Version	1.6.1 JSON
	download
home_page	None
Summary	Basic biological entities, coupled to public ontologies [`source <https://github.com/laminlabs/bionty/blob/main/bionty/models.py>`__].
upload_time	2025-07-21 11:35:28
maintainer	None
docs_url	None
author	None
requires_python	<3.14,>=3.10
license	None
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            [![Stars](https://img.shields.io/github/stars/laminlabs/bionty?logo=GitHub&color=yellow)](https://github.com/laminlabs/bionty)
[![pypi](https://img.shields.io/pypi/v/bionty?color=blue&label=pypi%20package)](https://pypi.org/project/bionty)

# bionty: Basic biological entities

- Access >20 public ontologies such as Gene, Protein, CellMarker, ExperimentalFactor, CellType, CellLine, Tissue, …
- Create records from entries in public ontologies using `.from_source()`.
- Access full underlying public ontologies via `.public()` to search & bulk-create records.
- Create in-house ontologies by extending public ontologies using hierarchical relationships among records (`.parents`).
- Use `.synonyms` and `.abbr` to manage synonyms.
- Safeguards against typos & duplications.
- Ontology versioning via the `bionty.Source` registry.

Read [docs](https://docs.lamin.ai/bionty).

            

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