[](https://github.com/biosimulators/Biosimulators_test_suite/releases)
[](https://pypi.org/project/Biosimulators-test-suite/)
[](https://github.com/biosimulators/Biosimulators_test_suite/actions?query=workflow%3A%22Continuous+integration%22)
[](https://codecov.io/gh/biosimulators/Biosimulators_test_suite)
[](#contributors-)
# BioSimulators test suite
The BioSimulators test suite is a tool for validating that biosimulation software tools implement the [BioSimulators conventions for biosimulation tools](https://docs.biosimulations.org/concepts/conventions/).
The test suite is composed of two parts:
* [A collection of example modeling projects](examples). Each project is represented by a single [COMBINE/OMEX archive](https://combinearchive.org/) that contains one or more simulation experiments described using the [Simulation Experiment Description Markup Language (SED-ML)](https://sed-ml.org) and one or more models described using a format such as the [BioNetGen Language (BNGL)](https://bionetgen.org) or the [Systems Biology Markup Language (SBML)](http://sbml.org).
* Software for checking that biosimulation tools execute these projects according to the BioSimulators conventions.
* Simulation tools support the [BioSimulators standard command-line arguments](https://docs.biosimulations.org/concepts/conventions/simulator-interfaces/).
* Simulation tools support the [BioSimulators conventions for Docker images](https://docs.biosimulations.org/concepts/conventions/simulator-images/).
* Simulation tools follow the [BioSimulators conventions for executing simulations described by SED-ML files in COMBINE/OMEX archives](https://docs.biosimulations.org/concepts/conventions/simulation-experiments/).
* Simulation tools support the [BioSimulators conventions for the outputs of SED-ML files in COMBINE/OMEX archives](https://docs.biosimulations.org/concepts/conventions/simulation-run-reports/).
## Installation instructions, tutorial, and API documentation
Installation instructions, tutorial, and API documentation are available [here](https://docs.biosimulators.org/Biosimulators_test_suite/).
## License
The software in this package is released under the [MIT License](LICENSE). The modeling projects in this package are released under the [Creative Commons 1.0 Universal (CC0) license](LICENSE-DATA).
## Development team
This package was developed by the [Karr Lab](https://www.karrlab.org) at the Icahn School of Medicine at Mount Sinai in New York, the [https://health.uconn.edu/cell-analysis-modeling/](https://health.uconn.edu/cell-analysis-modeling/) at the University of Connecticut, and the [Center for Reproducible Biomedical Modeling](http://reproduciblebiomodels.org) with assistance from the contributors listed [here](CONTRIBUTORS.md).
## Contributing to the test suite
We enthusiastically welcome contributions to the test suite! Please see the [guide to contributing](CONTRIBUTING.md) and the [developer's code of conduct](CODE_OF_CONDUCT.md).
## Acknowledgements
This work was supported by National Institutes of Health award P41EB023912.
## Questions and comments
Please contact the [BioSimulators Team](mailto:info@biosimulators.org) with any questions or comments.
Raw data
{
"_id": null,
"home_page": "https://github.com/biosimulators/Biosimulators_test_suite",
"name": "biosimulators-test-suite",
"maintainer": null,
"docs_url": null,
"requires_python": "<3.11,>=3.10",
"maintainer_email": null,
"keywords": "systems, biology, modeling, simulation, BioSimulators",
"author": "Center for Reproducible Modeling",
"author_email": "info@biosimulators.org",
"download_url": "https://files.pythonhosted.org/packages/f7/17/6113dea533ab1fdc50f6ff23b29d1e392aa6aac050c2b84d67696dda83da/biosimulators_test_suite-0.2.tar.gz",
"platform": null,
"description": "[](https://github.com/biosimulators/Biosimulators_test_suite/releases)\n[](https://pypi.org/project/Biosimulators-test-suite/)\n[](https://github.com/biosimulators/Biosimulators_test_suite/actions?query=workflow%3A%22Continuous+integration%22)\n[](https://codecov.io/gh/biosimulators/Biosimulators_test_suite)\n[](#contributors-)\n\n# BioSimulators test suite\n\nThe BioSimulators test suite is a tool for validating that biosimulation software tools implement the [BioSimulators conventions for biosimulation tools](https://docs.biosimulations.org/concepts/conventions/).\n\nThe test suite is composed of two parts:\n\n* [A collection of example modeling projects](examples). Each project is represented by a single [COMBINE/OMEX archive](https://combinearchive.org/) that contains one or more simulation experiments described using the [Simulation Experiment Description Markup Language (SED-ML)](https://sed-ml.org) and one or more models described using a format such as the [BioNetGen Language (BNGL)](https://bionetgen.org) or the [Systems Biology Markup Language (SBML)](http://sbml.org).\n\n* Software for checking that biosimulation tools execute these projects according to the BioSimulators conventions.\n\n * Simulation tools support the [BioSimulators standard command-line arguments](https://docs.biosimulations.org/concepts/conventions/simulator-interfaces/).\n * Simulation tools support the [BioSimulators conventions for Docker images](https://docs.biosimulations.org/concepts/conventions/simulator-images/).\n * Simulation tools follow the [BioSimulators conventions for executing simulations described by SED-ML files in COMBINE/OMEX archives](https://docs.biosimulations.org/concepts/conventions/simulation-experiments/).\n * Simulation tools support the [BioSimulators conventions for the outputs of SED-ML files in COMBINE/OMEX archives](https://docs.biosimulations.org/concepts/conventions/simulation-run-reports/).\n\n## Installation instructions, tutorial, and API documentation\nInstallation instructions, tutorial, and API documentation are available [here](https://docs.biosimulators.org/Biosimulators_test_suite/).\n\n## License\nThe software in this package is released under the [MIT License](LICENSE). The modeling projects in this package are released under the [Creative Commons 1.0 Universal (CC0) license](LICENSE-DATA).\n\n## Development team\nThis package was developed by the [Karr Lab](https://www.karrlab.org) at the Icahn School of Medicine at Mount Sinai in New York, the [https://health.uconn.edu/cell-analysis-modeling/](https://health.uconn.edu/cell-analysis-modeling/) at the University of Connecticut, and the [Center for Reproducible Biomedical Modeling](http://reproduciblebiomodels.org) with assistance from the contributors listed [here](CONTRIBUTORS.md).\n\n## Contributing to the test suite\nWe enthusiastically welcome contributions to the test suite! Please see the [guide to contributing](CONTRIBUTING.md) and the [developer's code of conduct](CODE_OF_CONDUCT.md).\n\n## Acknowledgements\nThis work was supported by National Institutes of Health award P41EB023912.\n\n## Questions and comments\nPlease contact the [BioSimulators Team](mailto:info@biosimulators.org) with any questions or comments.\n",
"bugtrack_url": null,
"license": "MIT License (MIT)",
"summary": "Tools for validating that biosimulation tools are consistent with the BioSimulators standards",
"version": "0.2",
"project_urls": {
"Homepage": "https://github.com/biosimulators/Biosimulators_test_suite",
"Repository": "https://github.com/biosimulators/Biosimulators_test_suite"
},
"split_keywords": [
"systems",
" biology",
" modeling",
" simulation",
" biosimulators"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "685682a39d8026f41104ff7d398ea56756fb41b43909f070ddbb3cab90c1745f",
"md5": "af206b66806e0b27693eb9bf0348d71f",
"sha256": "a4ec8fa063bdf12ac0fa87af88f956d1f03fd2b072c5ecc7b2a11fd63af282df"
},
"downloads": -1,
"filename": "biosimulators_test_suite-0.2-py3-none-any.whl",
"has_sig": false,
"md5_digest": "af206b66806e0b27693eb9bf0348d71f",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": "<3.11,>=3.10",
"size": 61738,
"upload_time": "2024-09-19T17:14:14",
"upload_time_iso_8601": "2024-09-19T17:14:14.488588Z",
"url": "https://files.pythonhosted.org/packages/68/56/82a39d8026f41104ff7d398ea56756fb41b43909f070ddbb3cab90c1745f/biosimulators_test_suite-0.2-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "f7176113dea533ab1fdc50f6ff23b29d1e392aa6aac050c2b84d67696dda83da",
"md5": "373dec17c4b56deffdc919f0eb700df6",
"sha256": "00ed414fea7cbca9811b805ea8cad6eb1397cf64c58638f49396f07b9cb2d25f"
},
"downloads": -1,
"filename": "biosimulators_test_suite-0.2.tar.gz",
"has_sig": false,
"md5_digest": "373dec17c4b56deffdc919f0eb700df6",
"packagetype": "sdist",
"python_version": "source",
"requires_python": "<3.11,>=3.10",
"size": 52748,
"upload_time": "2024-09-19T17:14:15",
"upload_time_iso_8601": "2024-09-19T17:14:15.624726Z",
"url": "https://files.pythonhosted.org/packages/f7/17/6113dea533ab1fdc50f6ff23b29d1e392aa6aac050c2b84d67696dda83da/biosimulators_test_suite-0.2.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-09-19 17:14:15",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "biosimulators",
"github_project": "Biosimulators_test_suite",
"travis_ci": false,
"coveralls": false,
"github_actions": true,
"lcname": "biosimulators-test-suite"
}
JSON
