bmxp

Name	bmxp JSON
Version	0.0.18 JSON
	download
home_page	https://github.com/broadinstitute/bmxp
Summary	LCMS Processing tools used by the Metabolomics Platform at the Broad Institute.
upload_time	2024-04-29 17:40:11
maintainer	None
docs_url	None
author	Daniel S. Hitchcock
requires_python	None
license	MIT
keywords	lcms alignment processing metabolomics clustering batch correction drift correction
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # BMXP - The Metabolomics Platform at the Broad Institute

`pip install bmxp`

This is a collection of tools we use daily for processing our data. Each tool performs a step in our processing workflow. Currently, we have published

* [Eclipse](https://github.com/broadinstitute/bmxp/tree/main/bmxp/eclipse) - Align two or more same-method nontargeted LCMS datsets.
* [Gravity](https://github.com/broadinstitute/bmxp/tree/main/bmxp/gravity) - Cluster redundant LCMS features based on RT and Correlation (And someday, XIC shape)

In the future we will add:

* Blueshift - Drift Correction via pooled technical replicates and internal standards
* Rawfilereader - C-optimized LCMS raw file reader for exploring raw files and formatting MS2


            

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