brooklyn-plot


Namebrooklyn-plot JSON
Version 0.0.3 PyPI version JSON
download
home_pagehttps://github.com/mhalushka/brooklyn/
SummaryGene co-expression and transcriptional bursting pattern recognition tool in single cell/nucleus RNA-sequencing data
upload_time2023-04-06 17:53:00
maintainer
docs_urlNone
authorArun Patil and Marc Halushka
requires_python>=3.7
licenseMIT
keywords brooklyn single cell single nucleus single cell-rna single nucleus-rna rna analysis cellxgene rna-seq bioinformatics tools co-expression transcriptional bursting sc-rnaseq sn-rnaseq
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls.
            ========
Brooklyn
========

Brooklyn plot for single cell/nuclei RNA sequencing data. This package enables a Pearson pairwise (ie., many to many) gene comparison and outputs co-expression patterns of genes across the genome. It generates a Brooklyn plot for visualization. More about this in the documentation below.

Links
-----

* `Documentation <https://brooklyn-plot.readthedocs.io/en/latest/>`_
* `Source code <https://github.com/arunhpatil/brooklyn/>`_
* `Report an issue <https://github.com/arunhpatil/brooklyn/issues>`_
* `Project page on PyPI <https://pypi.python.org/pypi/brooklyn-plot/>`_

========
Citation
========






            

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