# clinica-pydra-ants
[![PyPI - Version][pypi-version]][pypi-project]
[![PyPI - Python Version][pypi-pyversions]][pypi-project]
![][status-test]
-----
Pydra tasks for ANTs designed for Clinica
[Pydra][pydra] is a dataflow engine which provides
a set of lightweight abstractions for DAG
construction, manipulation, and distributed execution.
[ANTs][ants] is a toolbox for multi-variate image registration,
segmentation and statistical analysis.
[Clinica][clinica] is a software platform for clinical neuroimaging studies.
**Table of Contents**
- [Available Tasks](#available-tasks)
- [Installation](#installation)
- [Development](#development)
- [License](#license)
## Available Tasks
- ApplyTransforms
- CreateJacobianDeterminantImage
- N4BiasFieldCorrection
- Registration, registration_syn, registration_syn_quick
## Installation
```console
pip install clinica-pydra-ants
```
A separate installation of ANTs is required to use this package.
An official conda package is available through conda-forge:
```console
conda install -c conda-forge ants
```
## Development
This project is managed with [Hatch][hatch]:
```console
pipx install hatch
```
To run the test suite:
```console
hatch run test
```
To fix linting issues:
```console
hatch fmt
```
## License
This project is distributed under the terms of the [Apache License, Version 2.0][license].
[ants]: https://github.com/ANTsX/ANTs
[hatch]: https://hatch.pypa.io/
[license]: https://spdx.org/licenses/Apache-2.0.html
[pydra]: https://pydra.readthedocs.io/
[pypi-project]: https://pypi.org/project/clinica-pydra-ants
[pypi-pyversions]: https://img.shields.io/pypi/pyversions/clinica-pydra-ants.svg
[pypi-version]: https://img.shields.io/pypi/v/clinica-pydra-ants.svg
[status-test]: https://github.com/aramis-lab/clinica-pydra-ants/actions/workflows/test.yaml/badge.svg
[clinica]: https://www.clinica.run/
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