| Name | cortix JSON |
| Version |
1.1.38
JSON |
| download |
| home_page | https://cortix.org |
| Summary | Cortix is a Python library for network dynamics modeling and HPC simulation. |
| upload_time | 2024-04-20 22:43:52 |
| maintainer | None |
| docs_url | None |
| author | Cortix Computing |
| requires_python | >=3.11 |
| license | None |
| keywords |
simulation
math
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# Cortix
A Python library for network dynamics modeling and HPC simulation.
+ [Cortix on Jupyter notebook examples](https://github.com/dpploy/cortix-nb)
+ [Documentation on the web](https://cortix.org)
[](https://cortix.org)
[](https://badge.fury.io/py/cortix)
[](https://badge.fury.io/py/cortix)
[](https://codecov.io/gh/dpploy/cortix)
## What is Cortix?
* Cortix is a massively parallel Python library for system-level module coupling, execution, and
analysis of dynamical system models that exchange time-dependent data.
* Cortix takes as input a collection of computational modules and provides an
environment for the coupling of these modules into a single simulation.
* Cortix supports:
- Module decoupling
- Communication between modules
- Data visualization
* Cortix runs on top of [MPI](https://www.open-mpi.org/) and scales across many cores.
## Installation: start by installing [MPI](https://www.open-mpi.org/)
## Installing via PyPI
```
pip install --user cortix
```
NB: this will not install the GraphViz executables but only the python wrapper. Install the GraphViz library on your system by yourself.
## Installing via Conda
```
conda install cortix
conda install graphviz
```
## Installing from source
1. Clone this repository to install the latest version of Cortix
```
git clone https://github.com/dpploy/cortix.git
```
2. Install the required dependencies listed in `requirements.txt`
```
pip install --user -r cortix/requirements.txt
```
3. Add ```cortix```'s parent path to your ```$PYTHONPATH``` variable
```
export PYTHONPATH=$PYTHONPATH:$(pwd)
```
Note: you may want to add this line to your ```.bashrc``` in order for it to be persistent
### Verify your Cortix install by running the Droplet example
```
mpirun -np 12 examples/droplet_run.py
```
## Testing
Testing is facilitated by [PyTest](http://pytest.org). Tests can be run locally from within the `tests` directory
```
cd tests && py.test
```
## Using Cortix
Please refer to the [documentation](https://cortix.org/contents.html) for more on getting started!
## Team
- Valmor F. de Almeida: valmor\_dealmeida@uml.edu
- Taha M. Azzaoui: tazzaoui@cs.uml.edu
- Seamus D. Gallagher: seamus\_gallagher@student.uml.edu
- Austin Rotker: austin_rotker@student.uml.edu
- Gilberto E. Alas: gilberto\_alas@student.uml.edu
## Contributing
Pull requests are welcome. For major changes, please open an [issue](https://github.com/dpploy/cortix/issues) first to discuss what you would like to change.
Please make sure to update tests as appropriate.
## Location
Cortix Group
c/o [UMass Innovation Hub](https://www.uml.edu/Innovation-Hub/)
110 Canal St., 3rd Floor
Lowell, MA 01852
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