| Name | deciphon-snap JSON |
| Version |
0.12.0
JSON |
| download |
| home_page | None |
| Summary | Reader for Deciphon snap files. |
| upload_time | 2024-05-16 21:29:31 |
| maintainer | None |
| docs_url | None |
| author | Danilo Horta |
| requires_python | <4.0,>=3.9 |
| license | MIT |
| keywords |
|
| VCS |
|
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# deciphon-snap
## Example
```python
from deciphon_snap.read_snap import read_snap
snap_file = read_snap("example.dcs")
print(snap_file)
```
```
shape: (470, 7)
┌────────┬────────────┬─────┬─────────────┬─────────────┬─────────────┬───────────────────────────────────┐
│ seq_id │ profile │ abc │ alt │ null │ evalue │ match_list │
├────────┼────────────┼─────┼─────────────┼─────────────┼─────────────┼───────────────────────────────────┤
│ 0 │ PF00004.32 │ dna │ -1849.56006 │ -1850.08313 │ -13.8193617 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF03969.19 │ dna │ -1853.90649 │ -1850.08313 │ -16.1090849 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF00308.21 │ dna │ -1679.86353 │ -1850.08313 │ -193.97191 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ 0 │ PF08299.14 │ dna │ -1789.81091 │ -1850.08313 │ -71.2547802 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CGA,N,C… │
│ … │ … │ … │ … │ … │ … │ … │
│ 272 │ PF02371.19 │ dna │ -1385.17554 │ -1422.72034 │ -51.5481154 │ (∅,S,∅,∅) (ATG,N,ATG,M) (CAC,N,C… │
│ 295 │ PF01170.21 │ dna │ -2005.65234 │ -2003.75269 │ -12.6652124 │ (∅,S,∅,∅) (ATG,N,ATG,M) (TTC,N,T… │
│ 300 │ PF00750.22 │ dna │ -2282.74487 │ -2298.92017 │ -48.1403459 │ (∅,S,∅,∅) (ATG,N,ATG,M) (TTT,N,T… │
│ 302 │ PF13462.9 │ dna │ -855.013794 │ -853.616028 │ -16.6152838 │ (∅,S,∅,∅) (ATG,N,ATG,M) (AAA,N,A… │
└────────┴────────────┴─────┴─────────────┴─────────────┴─────────────┴───────────────────────────────────┘
```
Raw data
{
"_id": null,
"home_page": null,
"name": "deciphon-snap",
"maintainer": null,
"docs_url": null,
"requires_python": "<4.0,>=3.9",
"maintainer_email": null,
"keywords": null,
"author": "Danilo Horta",
"author_email": "horta@ebi.ac.uk",
"download_url": "https://files.pythonhosted.org/packages/13/00/80b3f50e8f010ea8563db89df74a368b1fb9a56f5ce0407e7030cbf4757d/deciphon_snap-0.12.0.tar.gz",
"platform": null,
"description": "# deciphon-snap\n\n## Example\n\n```python\nfrom deciphon_snap.read_snap import read_snap\n\nsnap_file = read_snap(\"example.dcs\")\nprint(snap_file)\n```\n\n```\nshape: (470, 7)\n\u250c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u252c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2510\n\u2502 seq_id \u2502 profile \u2502 abc \u2502 alt \u2502 null \u2502 evalue \u2502 match_list \u2502\n\u251c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u253c\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2524\n\u2502 0 \u2502 PF00004.32 \u2502 dna \u2502 -1849.56006 \u2502 -1850.08313 \u2502 -13.8193617 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (CGA,N,C\u2026 \u2502\n\u2502 0 \u2502 PF03969.19 \u2502 dna \u2502 -1853.90649 \u2502 -1850.08313 \u2502 -16.1090849 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (CGA,N,C\u2026 \u2502\n\u2502 0 \u2502 PF00308.21 \u2502 dna \u2502 -1679.86353 \u2502 -1850.08313 \u2502 -193.97191 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (CGA,N,C\u2026 \u2502\n\u2502 0 \u2502 PF08299.14 \u2502 dna \u2502 -1789.81091 \u2502 -1850.08313 \u2502 -71.2547802 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (CGA,N,C\u2026 \u2502\n\u2502 \u2026 \u2502 \u2026 \u2502 \u2026 \u2502 \u2026 \u2502 \u2026 \u2502 \u2026 \u2502 \u2026 \u2502\n\u2502 272 \u2502 PF02371.19 \u2502 dna \u2502 -1385.17554 \u2502 -1422.72034 \u2502 -51.5481154 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (CAC,N,C\u2026 \u2502\n\u2502 295 \u2502 PF01170.21 \u2502 dna \u2502 -2005.65234 \u2502 -2003.75269 \u2502 -12.6652124 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (TTC,N,T\u2026 \u2502\n\u2502 300 \u2502 PF00750.22 \u2502 dna \u2502 -2282.74487 \u2502 -2298.92017 \u2502 -48.1403459 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (TTT,N,T\u2026 \u2502\n\u2502 302 \u2502 PF13462.9 \u2502 dna \u2502 -855.013794 \u2502 -853.616028 \u2502 -16.6152838 \u2502 (\u2205,S,\u2205,\u2205) (ATG,N,ATG,M) (AAA,N,A\u2026 \u2502\n\u2514\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2534\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2500\u2518\n```\n\n",
"bugtrack_url": null,
"license": "MIT",
"summary": "Reader for Deciphon snap files.",
"version": "0.12.0",
"project_urls": null,
"split_keywords": [],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "0351f7bf94f37bfc67d2f63a362283b47baf502b0e932ac538b01647905355cc",
"md5": "6d73748dd5187feb0a96b38396929885",
"sha256": "fd986b5ea31244c9c31f2ade0a3c1dc0e47a19bd14779507a35a03e660722e65"
},
"downloads": -1,
"filename": "deciphon_snap-0.12.0-py3-none-any.whl",
"has_sig": false,
"md5_digest": "6d73748dd5187feb0a96b38396929885",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": "<4.0,>=3.9",
"size": 14578,
"upload_time": "2024-05-16T21:29:29",
"upload_time_iso_8601": "2024-05-16T21:29:29.875526Z",
"url": "https://files.pythonhosted.org/packages/03/51/f7bf94f37bfc67d2f63a362283b47baf502b0e932ac538b01647905355cc/deciphon_snap-0.12.0-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "130080b3f50e8f010ea8563db89df74a368b1fb9a56f5ce0407e7030cbf4757d",
"md5": "79a334f392986ba1b4f9be7d063fb49b",
"sha256": "33fad5607013964482dfa567a574898652277853ae39af0095bad4c10ac7f578"
},
"downloads": -1,
"filename": "deciphon_snap-0.12.0.tar.gz",
"has_sig": false,
"md5_digest": "79a334f392986ba1b4f9be7d063fb49b",
"packagetype": "sdist",
"python_version": "source",
"requires_python": "<4.0,>=3.9",
"size": 10141,
"upload_time": "2024-05-16T21:29:31",
"upload_time_iso_8601": "2024-05-16T21:29:31.763608Z",
"url": "https://files.pythonhosted.org/packages/13/00/80b3f50e8f010ea8563db89df74a368b1fb9a56f5ce0407e7030cbf4757d/deciphon_snap-0.12.0.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-05-16 21:29:31",
"github": false,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"lcname": "deciphon-snap"
}
