| Name | dzdomop JSON |
| Version |
0.4.0
JSON |
| download |
| home_page | None |
| Summary | A Python ORM/data classes representation of the OMOP Common Data Model in different flavors powered by sqlacodegen |
| upload_time | 2025-01-15 14:09:12 |
| maintainer | None |
| docs_url | None |
| author | None |
| requires_python | >=3.10 |
| license | MIT |
| keywords |
dzd
omop
|
| VCS |
 |
| bugtrack_url |
|
| requirements |
No requirements were recorded.
|
| Travis-CI |
No Travis.
|
| coveralls test coverage |
No coveralls.
|
# DZD - OMOP CDM Python ORM/Data Classes Representation
A Python ORM/data classes representation of the [Observational Medical Outcomes Partnership (OMOP) Common Data Model (CDM)](https://www.ohdsi.org/data-standardization/) in different flavors powered by [sqlacodegen](https://github.com/agronholm/sqlacodegen)
Author/Maintainer: Tim Bleimehl
For more background how this sausage is made have a look at the github repo at https://github.com/DZD-eV-Diabetes-Research/dzd-omop-cdm-python-models
This Readme is a "work in process". Come back later for a more complete manual.
# Install
Just install the python module from pypi.org
`python -m pip install --upgrade dzdomop`
# How to use
This tiny script demostrates how this module can help you to
* Create a local dev database with the complete omop datamodel
* insert some data based on our classes with some basic guardrails like type validation, typo prevention, ...
```python
from sqlalchemy import create_engine
from sqlalchemy.orm import Session
from omopmodel import OMOP_5_3_declarative as omop
# Create a local SQLite database with all OMOP CDM tables+properties
engine = create_engine("sqlite:///cdm_source.db", echo=True)
omop.Base.metadata.create_all(engine)
# Create a some basic OMOP objects
care_site = omop.CareSite(care_site_id=5678, care_site_name="St. Local")
person = omop.Person(
person_id=1234,
year_of_birth=1985,
care_site=care_site,
gender_concept_id=1,
race_concept_id=1,
ethnicity_concept_id=1,
)
# Write the Object to the database
with Session(engine) as session:
session.add(care_site)
session.add(person)
session.commit()
```
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