|pypi| |actions| |codecov| |downloads|
edc-adverse-event
-----------------
Create an AE application
------------------------
Create an AE app that will house your AE concrete models, admin site, list data, and action items.
Adverse events models
---------------------
Model mixins exist for you to create the following concrete models in your AE app:
* AE Initial: The initial report of a adverse event
* AE Followup: 1 or more follow-ups to the initial AE report
* AE Special Interest
* AE SUSAR
* AE External Reviewer
* Death Report
* Death Report External Reviewer
TMG: Trial Management Group forms
* AE Tmg:
Settings
--------
These are the ``settings`` attributes you need to define for ``edc_adverse_event``:
.. code-block:: python
# settings.py
...
ADVERSE_EVENT_APP_LABEL="edc_adverse_event" # replace with your AE app label
ADVERSE_EVENT_ADMIN_SITE="edc_adverse_event_admin" # replave with your AE app admin site name
...
Define a list_data.py
---------------------
There are a few FK fields on the AE models. You need to define a ``list_data.py`` that will be read to populate the FK list models.
The list model tables are:
* ``edc_adverse_event.aeclassification`` (See AeInitial)
* ``edc_adverse_event.saereason`` (See AeInitial)
.. code-block:: python
# list_data.py
list_data = {
"edc_adverse_event.aeclassification": [
(ANAEMIA, "Anaemia"),
("diarrhoea", "Diarrhoea"),
(RENAL_IMPAIRMENT, "Renal impairment"),
(OTHER, "Other"),
],
"edc_adverse_event.saereason": [
(NOT_APPLICABLE, "Not applicable"),
(DEAD, "Death"),
("life_threatening", "Life-threatening"),
("significant_disability", "Significant disability"),
(
"in-patient_hospitalization",
(
"In-patient hospitalization or prolongation "
"(17 or more days from study inclusion)"
),
),
(
"medically_important_event",
"Medically important event (e.g. recurrence of symptoms not requiring admission, "
"Hospital acquired pneumonia)",
),
],
}
preload_data = PreloadData(
list_data=list_data, model_data={}, unique_field_data=None)
Register AE Action Items
------------------------
The AE action items are not registered by default. To register, in the root of your AE app add an ``action_items.py``:
.. code-block:: python
# action_items.py
from edc_adverse_event.action_items import AeInitialAction
from edc_adverse_event.action_items import AeFollowupAction
from edc_adverse_event.action_items import AeSusarAction
from edc_adverse_event.action_items import AeTmgAction
site_action_items.register(AeInitialAction)
site_action_items.register(AeFollowupAction)
site_action_items.register(AeTmgAction)
site_action_items.register(AeSusarAction)
.. |pypi| image:: https://img.shields.io/pypi/v/edc-adverse-event.svg
:target: https://pypi.python.org/pypi/edc-adverse-event
.. |actions| image:: https://github.com/clinicedc/edc-adverse-event/actions/workflows/build.yml/badge.svg
:target: https://github.com/clinicedc/edc-adverse-event/actions/workflows/build.yml
.. |codecov| image:: https://codecov.io/gh/clinicedc/edc-adverse-event/branch/develop/graph/badge.svg
:target: https://codecov.io/gh/clinicedc/edc-adverse-event
.. |downloads| image:: https://pepy.tech/badge/edc-adverse-event
:target: https://pepy.tech/project/edc-adverse-event
Raw data
{
"_id": null,
"home_page": "https://github.com/clinicedc/edc-adverse-event",
"name": "edc-adverse-event",
"maintainer": null,
"docs_url": null,
"requires_python": ">=3.12",
"maintainer_email": null,
"keywords": "django Edc adverse events, clinicedc, clinical trials",
"author": "Erik van Widenfelt",
"author_email": "ew2789@gmail.com",
"download_url": "https://files.pythonhosted.org/packages/23/14/c010a37ec802d0deae436a26dadc79b3e663b8cbb1bdd937151aeebe9a57/edc_adverse_event-0.3.86.tar.gz",
"platform": null,
"description": "|pypi| |actions| |codecov| |downloads|\n\nedc-adverse-event\n-----------------\n\nCreate an AE application\n------------------------\n\nCreate an AE app that will house your AE concrete models, admin site, list data, and action items.\n\nAdverse events models\n---------------------\n\nModel mixins exist for you to create the following concrete models in your AE app:\n\n* AE Initial: The initial report of a adverse event\n* AE Followup: 1 or more follow-ups to the initial AE report\n* AE Special Interest\n* AE SUSAR\n* AE External Reviewer\n* Death Report\n* Death Report External Reviewer\n\nTMG: Trial Management Group forms\n\n* AE Tmg:\n\nSettings\n--------\n\nThese are the ``settings`` attributes you need to define for ``edc_adverse_event``:\n\n.. code-block:: python\n\n # settings.py\n\n ...\n\n ADVERSE_EVENT_APP_LABEL=\"edc_adverse_event\" # replace with your AE app label\n ADVERSE_EVENT_ADMIN_SITE=\"edc_adverse_event_admin\" # replave with your AE app admin site name\n\n ...\n\nDefine a list_data.py\n---------------------\n\nThere are a few FK fields on the AE models. You need to define a ``list_data.py`` that will be read to populate the FK list models.\n\nThe list model tables are:\n* ``edc_adverse_event.aeclassification`` (See AeInitial)\n* ``edc_adverse_event.saereason`` (See AeInitial)\n\n.. code-block:: python\n\n # list_data.py\n\n list_data = {\n \"edc_adverse_event.aeclassification\": [\n (ANAEMIA, \"Anaemia\"),\n (\"diarrhoea\", \"Diarrhoea\"),\n (RENAL_IMPAIRMENT, \"Renal impairment\"),\n (OTHER, \"Other\"),\n ],\n \"edc_adverse_event.saereason\": [\n (NOT_APPLICABLE, \"Not applicable\"),\n (DEAD, \"Death\"),\n (\"life_threatening\", \"Life-threatening\"),\n (\"significant_disability\", \"Significant disability\"),\n (\n \"in-patient_hospitalization\",\n (\n \"In-patient hospitalization or prolongation \"\n \"(17 or more days from study inclusion)\"\n ),\n ),\n (\n \"medically_important_event\",\n \"Medically important event (e.g. recurrence of symptoms not requiring admission, \"\n \"Hospital acquired pneumonia)\",\n ),\n ],\n }\n\n preload_data = PreloadData(\n list_data=list_data, model_data={}, unique_field_data=None)\n\n\nRegister AE Action Items\n------------------------\n\nThe AE action items are not registered by default. To register, in the root of your AE app add an ``action_items.py``:\n\n.. code-block:: python\n\n # action_items.py\n\n from edc_adverse_event.action_items import AeInitialAction\n from edc_adverse_event.action_items import AeFollowupAction\n from edc_adverse_event.action_items import AeSusarAction\n from edc_adverse_event.action_items import AeTmgAction\n\n site_action_items.register(AeInitialAction)\n site_action_items.register(AeFollowupAction)\n site_action_items.register(AeTmgAction)\n site_action_items.register(AeSusarAction)\n\n\n\n.. |pypi| image:: https://img.shields.io/pypi/v/edc-adverse-event.svg\n :target: https://pypi.python.org/pypi/edc-adverse-event\n\n.. |actions| image:: https://github.com/clinicedc/edc-adverse-event/actions/workflows/build.yml/badge.svg\n :target: https://github.com/clinicedc/edc-adverse-event/actions/workflows/build.yml\n\n.. |codecov| image:: https://codecov.io/gh/clinicedc/edc-adverse-event/branch/develop/graph/badge.svg\n :target: https://codecov.io/gh/clinicedc/edc-adverse-event\n\n.. |downloads| image:: https://pepy.tech/badge/edc-adverse-event\n :target: https://pepy.tech/project/edc-adverse-event\n",
"bugtrack_url": null,
"license": "GPL license, see LICENSE",
"summary": "Adverse event and death classes for clinicedc/edc projects",
"version": "0.3.86",
"project_urls": {
"Homepage": "https://github.com/clinicedc/edc-adverse-event"
},
"split_keywords": [
"django edc adverse events",
" clinicedc",
" clinical trials"
],
"urls": [
{
"comment_text": "",
"digests": {
"blake2b_256": "17d73731c36d6c6cf6b9fbd82c267334ec570a154497d3a38dafa25b7fbbb6c3",
"md5": "912bdcadb1a9482d925e6a0853ec49a7",
"sha256": "b211384a9a344c2d925a0735a9d1b6c24936f848c736b987803579bcaeb2697a"
},
"downloads": -1,
"filename": "edc_adverse_event-0.3.86-py3-none-any.whl",
"has_sig": false,
"md5_digest": "912bdcadb1a9482d925e6a0853ec49a7",
"packagetype": "bdist_wheel",
"python_version": "py3",
"requires_python": ">=3.12",
"size": 162163,
"upload_time": "2024-11-20T22:26:12",
"upload_time_iso_8601": "2024-11-20T22:26:12.563279Z",
"url": "https://files.pythonhosted.org/packages/17/d7/3731c36d6c6cf6b9fbd82c267334ec570a154497d3a38dafa25b7fbbb6c3/edc_adverse_event-0.3.86-py3-none-any.whl",
"yanked": false,
"yanked_reason": null
},
{
"comment_text": "",
"digests": {
"blake2b_256": "2314c010a37ec802d0deae436a26dadc79b3e663b8cbb1bdd937151aeebe9a57",
"md5": "36bbf6c98048997619c2a35630cf8331",
"sha256": "c2a0af9ec5b6645b3effa24393ccf69d95166630b02bce180c3159b1c61b5d15"
},
"downloads": -1,
"filename": "edc_adverse_event-0.3.86.tar.gz",
"has_sig": false,
"md5_digest": "36bbf6c98048997619c2a35630cf8331",
"packagetype": "sdist",
"python_version": "source",
"requires_python": ">=3.12",
"size": 91987,
"upload_time": "2024-11-20T22:26:14",
"upload_time_iso_8601": "2024-11-20T22:26:14.479920Z",
"url": "https://files.pythonhosted.org/packages/23/14/c010a37ec802d0deae436a26dadc79b3e663b8cbb1bdd937151aeebe9a57/edc_adverse_event-0.3.86.tar.gz",
"yanked": false,
"yanked_reason": null
}
],
"upload_time": "2024-11-20 22:26:14",
"github": true,
"gitlab": false,
"bitbucket": false,
"codeberg": false,
"github_user": "clinicedc",
"github_project": "edc-adverse-event",
"travis_ci": false,
"coveralls": true,
"github_actions": true,
"lcname": "edc-adverse-event"
}
JSON
