effect-edc


Nameeffect-edc JSON
Version 0.1.56 PyPI version JSON
download
home_pagehttps://github.com/effect-trial/effect-edc
SummaryEFFECT Trial EDC (https://www.isrctn.com/ISRCTN30579828)
upload_time2024-09-20 13:02:47
maintainerNone
docs_urlNone
authorErik van Widenfelt
requires_python>=3.12
licenseGPL license, see LICENSE
keywords django edc effect edc clinicedc clinical trials
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage
            |pypi| |actions| |codecov| |downloads|


EFFECT Edc
----------

|effect_logo|

The EFFECT Trial

Fluconazole plus flucytosine vs. fluconazole alone for cryptococcal antigen-positive patients identified through screening:
A phase III randomised controlled trial

(EFFECT - Efficacy of Flucytosine and Fluconazole as Early Cryptococcal Treatment)

https://www.isrctn.com/ISRCTN30579828

See also https://github.com/clinicedc/edc

|django|

Installation
------------

To setup and run a test server locally

You'll need mysql. Create the database

.. code-block:: bash

  mysql -Bse 'create database effect character set utf8;'


Create a virtualenv, clone the main repo and checkout master

.. code-block:: bash

  conda create -n edc python=3.12
  conda activate edc


Clone the main repo and checkout master

.. code-block:: bash

  mkdir ~/projects
  cd projects
  https://github.com/effect-trial/effect-edc.git
  cd ~/projects/effect-edc
  git checkout main


Copy the test environment file

.. code-block:: bash

  cd ~/projects/effect-edc
  git checkout main
  cp .env.tests .env


Edit the environment file (.env) to include your mysql password in the ``DATABASE_URL``.

.. code-block:: bash

  # look for and update this line
  DATABASE_URL=mysql://user:password@127.0.0.1:3306/effect


Continue with the installation

.. code-block:: bash

  cd ~/projects/effect-edc
  git checkout main
  pip install .
  pip install -U -r requirements.txt
  python manage.py migrate
  python manage.py import_randomization_list
  python manage.py import_holidays


Create a user and start up `runserver`

.. code-block:: bash

  cd ~/projects/effect-edc
  git checkout main
  python manage.py createsuperuser
  python manage.py runserver


Login::

  http://localhost:8000

.. |effect_logo| image:: https://github.com/effect-trial/effect-edc/blob/develop/docs/effect_logo_sm.jpg
   :target: https://github.com/effect-trial/effect-edc

.. |pypi| image:: https://img.shields.io/pypi/v/effect-edc.svg
   :target: https://pypi.python.org/pypi/effect-edc

.. |actions| image:: https://github.com/effect-trial/effect-edc/actions/workflows/build.yml/badge.svg
   :target: https://github.com/effect-trial/effect-edc/actions/workflows/build.yml

.. |codecov| image:: https://codecov.io/gh/effect-trial/effect-edc/branch/develop/graph/badge.svg
   :target: https://codecov.io/gh/effect-trial/effect-edc

.. |downloads| image:: https://pepy.tech/badge/effect-edc
   :target: https://pepy.tech/project/effect-edc

.. |django| image:: https://www.djangoproject.com/m/img/badges/djangomade124x25.gif
   :target: http://www.djangoproject.com/
   :alt: Made with Django

            

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