|pypi| |actions| |codecov| |downloads| |uv| |ruff| |clinicedc|
EFFECT Edc
----------
|effect_logo|
The EFFECT Trial
Fluconazole plus flucytosine vs. fluconazole alone for cryptococcal antigen-positive patients identified through screening:
A phase III randomised controlled trial
(EFFECT - Efficacy of Flucytosine and Fluconazole as Early Cryptococcal Treatment)
https://www.isrctn.com/ISRCTN30579828
Homepage: https://github.com/effect-trial/
Documentation: https://effect-edc.readthedocs.io/
|django|
Installation
------------
To setup and run a test server locally
You'll need mysql. Create the database
.. code-block:: bash
mysql -Bse 'create database effect character set utf8;'
Clone the main repo and checkout main
.. code-block:: bash
mkdir ~/projects
cd projects
https://github.com/effect-trial/effect-edc.git
cd ~/projects/effect-edc
git checkout main
Create a venv with uv
.. code-block:: bash
uv venv
source .venv/bin/activate
uv sync --no-sources --upgrade
Copy the test environment file
.. code-block:: bash
mkdir ~/.clinicedc/effect_edc
cd ~/projects/effect-edc
cp .env.tests ~/.clinicedc/effect_edc/.env
Edit the environment file (.env) to include your mysql password in the ``DATABASE_URL``.
.. code-block:: bash
# look for and update this line
DATABASE_URL=mysql://user:password@127.0.0.1:3306/effect
Continue with the installation. FOr this example we setup up a test server (DEBUG=True)
.. code-block:: bash
cd ~/projects/effect-edc
python manage.py migrate --settings=effect_edc.settings.debug
python manage.py import_randomization_list
python manage.py import_holidays
Create a user and start up `runserver`
.. code-block:: bash
cd ~/projects/effect-edc
git checkout main
python manage.py createsuperuser
python manage.py runserver
Login::
http://localhost:8000
.. |effect_logo| image:: https://github.com/effect-trial/effect-edc/blob/develop/docs/effect_logo_sm.jpg
:target: https://github.com/effect-trial/effect-edc
.. |pypi| image:: https://img.shields.io/pypi/v/effect-edc.svg
:target: https://pypi.python.org/pypi/effect-edc
.. |actions| image:: https://github.com/effect-trial/effect-edc/actions/workflows/build.yml/badge.svg
:target: https://github.com/effect-trial/effect-edc/actions/workflows/build.yml
.. |codecov| image:: https://codecov.io/gh/effect-trial/effect-edc/branch/develop/graph/badge.svg
:target: https://codecov.io/gh/effect-trial/effect-edc
.. |downloads| image:: https://pepy.tech/badge/effect-edc
:target: https://pepy.tech/project/effect-edc
.. |django| image:: https://www.djangoproject.com/m/img/badges/djangomade124x25.gif
:target: http://www.djangoproject.com/
:alt: Made with Django
.. |clinicedc| image:: https://img.shields.io/badge/framework-Clinic_EDC-green
:alt:Made with clinicedc
:target: https://github.com/clinicedc
.. |uv| image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/uv/main/assets/badge/v0.json
:target: https://github.com/astral-sh/uv
.. |ruff| image:: https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json
:target: https://github.com/astral-sh/ruff
:alt: Ruff
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