# DataJoint Element - Miniscope Calcium Imaging
DataJoint Element for functional calcium imaging data acquired with the
[UCLA Miniscope](https://github.com/Aharoni-Lab/Miniscope-v4) and
[Miniscope DAQ](https://github.com/Aharoni-Lab/Miniscope-DAQ-QT-Software) acquisition
system, and analyzed with [CaImAn](https://github.com/flatironinstitute/CaImAn).
DataJoint Elements collectively standardize and automate data collection and analysis
for neuroscience experiments. Each Element is a modular pipeline for data storage and
processing with corresponding database tables that can be combined with other Elements
to assemble a fully functional pipeline.
## Experiment Flowchart
## Data Pipeline Diagram
## Getting Started
+ Install from PyPI
```bash
pip install element-miniscope
```
+ [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/workflow-miniscope#interactive-tutorial)
+ [Documentation](https://datajoint.com/docs/elements/element-miniscope)
## Support
+ If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.
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"description": "# DataJoint Element - Miniscope Calcium Imaging\n\nDataJoint Element for functional calcium imaging data acquired with the\n[UCLA Miniscope](https://github.com/Aharoni-Lab/Miniscope-v4) and\n[Miniscope DAQ](https://github.com/Aharoni-Lab/Miniscope-DAQ-QT-Software) acquisition \nsystem, and analyzed with [CaImAn](https://github.com/flatironinstitute/CaImAn). \nDataJoint Elements collectively standardize and automate data collection and analysis \nfor neuroscience experiments. Each Element is a modular pipeline for data storage and \nprocessing with corresponding database tables that can be combined with other Elements \nto assemble a fully functional pipeline.\n\n## Experiment Flowchart\n\n\n\n## Data Pipeline Diagram\n\n\n\n## Getting Started\n\n+ Install from PyPI\n\n ```bash\n pip install element-miniscope\n ```\n\n+ [Interactive tutorial on GitHub Codespaces](https://github.com/datajoint/workflow-miniscope#interactive-tutorial)\n\n+ [Documentation](https://datajoint.com/docs/elements/element-miniscope)\n\n## Support\n\n+ If you need help getting started or run into any errors, please contact our team by email at support@datajoint.com.\n\n\n",
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