flight-genome

Name	flight-genome JSON
Version	1.6.2 JSON
	download
home_page	https://github.com/rhysnewell/flight
Summary	flight - metagenomic binner and variant clusterer.
upload_time	2023-11-16 02:24:06
maintainer
docs_url	None
author	Rhys Newell
requires_python
license	BSD-3
keywords
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            # Flight
The python component used by [Lorikeet](https://github.com/rhysnewell/Lorikeet) and [Rosella](https://github.com/rhysnewell/rosella)

# Installation
This module is only used in conjunction with other programs, but if you wish to install and play around with the code 
follow these instructions:

```
git clone https://github.com/rhysnewell/flight.git
cd flight
conda env create -n flight -f flight.yml
conda activate flight
pip install .
flight bin --help
```

# Requirements

Initial requirements for flight can be downloaded using the `flight.yml`:
```
conda env create -n flight -f flight.yml
```

# Usage

To perform mag recovery:
```
flight bin --assembly scaffolds.fasta --input coverm.cov --output output_dir/ --threads 24
```

            

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