<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/fRAT.gif?raw=true" width=500>
# fRAT - fMRI ROI Analysis Tool
[](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7)
[](http://makeapullrequest.com)
[](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE)
[](https://github.com/elliohow/fmri_roi_analysis_tool/releases/latest)
[](https://github.com/elliohow/fmri_roi_analysis_tool/issues)
[](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/)
fRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by
converting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.
> fRAT is written using **Python** for **MacOS, Linux and WSL2**.
Documentation:
[Home page](https://fmri-roi-analysis-tool.readthedocs.io)
[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)
[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)
## Citation
**When using fRAT, please include the following citation:**
Howley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200
## Reporting bugs
To report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).
For other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).
## Contributing to the project
If you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).
## Versioning
We use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the
[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.
## Licensing
This project uses the Apache 2.0 license. For the text version of the license see
[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE).
Prior to version 1.0.0, this project used an MIT license.
## Images
<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/GUI.png?raw=true" title="Example of the fRAT GUI" width=700>
<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/HTML_report.png?raw=true" title="Example of a HTML report output by fRAT" width=600>
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"description": "<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/fRAT.gif?raw=true\" width=500>\n\n# fRAT - fMRI ROI Analysis Tool\n[](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7)\n[](http://makeapullrequest.com) \n[](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE)\n[](https://github.com/elliohow/fmri_roi_analysis_tool/releases/latest)\n[](https://github.com/elliohow/fmri_roi_analysis_tool/issues)\n[](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/)\n\nfRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by\nconverting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.\n\n> fRAT is written using **Python** for **MacOS, Linux and WSL2**.\n\nDocumentation:\n\n[Home page](https://fmri-roi-analysis-tool.readthedocs.io)\n\n[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)\n\n[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)\n\n## Citation\n\n**When using fRAT, please include the following citation:**\n\nHowley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200\n\n## Reporting bugs\n\nTo report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).\n\nFor other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).\n\n## Contributing to the project\n\nIf you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).\n\n## Versioning\nWe use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the\n[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.\n\n## Licensing\nThis project uses the Apache 2.0 license. For the text version of the license see\n[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE). \nPrior to version 1.0.0, this project used an MIT license.\n\n## Images\n<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/GUI.png?raw=true\" title=\"Example of the fRAT GUI\" width=700>\n\n<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/HTML_report.png?raw=true\" title=\"Example of a HTML report output by fRAT\" width=600>\n",
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