frat-brain


Namefrat-brain JSON
Version 1.6.5 PyPI version JSON
download
home_pagehttps://fmri-roi-analysis-tool.readthedocs.io/en/latest/
SummaryApplication for ROI fMRI data analysis.
upload_time2024-05-02 14:15:24
maintainerNone
docs_urlNone
authorElliot Howley
requires_python<3.11,>=3.10
licenseNone
keywords
VCS
bugtrack_url
requirements No requirements were recorded.
Travis-CI No Travis.
coveralls test coverage No coveralls. 
            <img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/fRAT.gif?raw=true" width=500>

# fRAT - fMRI ROI Analysis Tool
[![status](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7/status.svg)](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7)
[![PRs Welcome](https://img.shields.io/badge/PRs-welcome-brightgreen.svg?style=flat-square)](http://makeapullrequest.com) 
[![GitHub license](https://img.shields.io/hexpm/l/plug?style=flat-square)](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE)
[![Github release (latest by date)](https://img.shields.io/github/v/release/elliohow/fmri_roi_analysis_tool?style=flat-square)](https://github.com/elliohow/fmri_roi_analysis_tool/releases/latest)
[![Github issues](https://img.shields.io/github/issues/elliohow/fmri_roi_analysis_tool?style=flat-square)](https://github.com/elliohow/fmri_roi_analysis_tool/issues)
[![Documentation](https://img.shields.io/readthedocs/fmri-roi-analysis-tool)](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/)

fRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by
converting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.

> fRAT is written using **Python** for **MacOS, Linux and WSL2**.

Documentation:

[Home page](https://fmri-roi-analysis-tool.readthedocs.io)

[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)

[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)

## Citation

**When using fRAT, please include the following citation:**

Howley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200

## Reporting bugs

To report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).

For other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).

## Contributing to the project

If you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).

## Versioning
We use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the
[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.

## Licensing
This project uses the Apache 2.0 license. For the text version of the license see
[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE). 
Prior to version 1.0.0, this project used an MIT license.

## Images
<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/GUI.png?raw=true" title="Example of the fRAT GUI" width=700>

<img src="https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/HTML_report.png?raw=true" title="Example of a HTML report output by fRAT" width=600>

Raw data

            {
    "_id": null,
    "home_page": "https://fmri-roi-analysis-tool.readthedocs.io/en/latest/",
    "name": "frat-brain",
    "maintainer": null,
    "docs_url": null,
    "requires_python": "<3.11,>=3.10",
    "maintainer_email": null,
    "keywords": null,
    "author": "Elliot Howley",
    "author_email": "elliohow@hotmail.com",
    "download_url": "https://files.pythonhosted.org/packages/9e/90/fe96aae7645435f5e3351cb97fee9ef63ceefe876dc3c0a554656117179f/frat_brain-1.6.5.tar.gz",
    "platform": null,
    "description": "<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/fRAT.gif?raw=true\" width=500>\n\n# fRAT - fMRI ROI Analysis Tool\n[![status](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7/status.svg)](https://joss.theoj.org/papers/cc9c0cb3b12abaf30c8381728d3229d7)\n[![PRs Welcome](https://img.shields.io/badge/PRs-welcome-brightgreen.svg?style=flat-square)](http://makeapullrequest.com) \n[![GitHub license](https://img.shields.io/hexpm/l/plug?style=flat-square)](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE)\n[![Github release (latest by date)](https://img.shields.io/github/v/release/elliohow/fmri_roi_analysis_tool?style=flat-square)](https://github.com/elliohow/fmri_roi_analysis_tool/releases/latest)\n[![Github issues](https://img.shields.io/github/issues/elliohow/fmri_roi_analysis_tool?style=flat-square)](https://github.com/elliohow/fmri_roi_analysis_tool/issues)\n[![Documentation](https://img.shields.io/readthedocs/fmri-roi-analysis-tool)](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/)\n\nfRAT is an open-source python-based GUI application used to simplify the processing and analysis of fMRI data by\nconverting voxelwise maps into ROI-wise maps. An installation of FSL is required in order to use fRAT.\n\n> fRAT is written using **Python** for **MacOS, Linux and WSL2**.\n\nDocumentation:\n\n[Home page](https://fmri-roi-analysis-tool.readthedocs.io)\n\n[Installation instructions](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/installation.html)\n\n[ROI analysis tutorial](https://fmri-roi-analysis-tool.readthedocs.io/en/latest/tutorials/Basic-ROI-analysis.html)\n\n## Citation\n\n**When using fRAT, please include the following citation:**\n\nHowley, E., Francis, S., & Schluppeck, D. (2023). fRAT: an interactive, Python-based tool for region-of-interest summaries of functional imaging data. Journal of Open Source Software, 8(85), 5200. https://doi.org/10.21105/joss.05200\n\n## Reporting bugs\n\nTo report a bug or suggest a new feature, please go to [fRAT's Issues](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/issues/new/choose).\n\nFor other questions, issues or discussion please go to [fRAT's Discussions](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/discussions).\n\n## Contributing to the project\n\nIf you'd like to contribute to the project please read our [contributing guidelines](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CONTRIBUTING.md). Please also read through our [code of conduct](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/CODE_OF_CONDUCT.md).\n\n## Versioning\nWe use [Semantic versioning](http://semver.org/) for versioning. For the versions available, see the\n[tag list](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/tags) for this project.\n\n## Licensing\nThis project uses the Apache 2.0 license. For the text version of the license see\n[here](https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/LICENSE). \nPrior to version 1.0.0, this project used an MIT license.\n\n## Images\n<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/GUI.png?raw=true\" title=\"Example of the fRAT GUI\" width=700>\n\n<img src=\"https://github.com/elliohow/fMRI_ROI_Analysis_Tool/blob/master/docs/images/HTML_report.png?raw=true\" title=\"Example of a HTML report output by fRAT\" width=600>\n",
    "bugtrack_url": null,
    "license": null,
    "summary": "Application for ROI fMRI data analysis.",
    "version": "1.6.5",
    "project_urls": {
        "Homepage": "https://fmri-roi-analysis-tool.readthedocs.io/en/latest/",
        "Repository": "https://github.com/elliohow/fMRI_ROI_Analysis_Tool"
    },
    "split_keywords": [],
    "urls": [
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "4794bcd5ab47d387942aa3e043512b6977d3440c14cc87f47ba675eeb4d77288",
                "md5": "2e14b754152b4bda10ad9a7a57deba1f",
                "sha256": "d9a36eaa6571f3aca0502801f1927a477f68f703695d9d24d2f00528d976cc08"
            },
            "downloads": -1,
            "filename": "frat_brain-1.6.5-py3-none-any.whl",
            "has_sig": false,
            "md5_digest": "2e14b754152b4bda10ad9a7a57deba1f",
            "packagetype": "bdist_wheel",
            "python_version": "py3",
            "requires_python": "<3.11,>=3.10",
            "size": 148476,
            "upload_time": "2024-05-02T14:15:22",
            "upload_time_iso_8601": "2024-05-02T14:15:22.221111Z",
            "url": "https://files.pythonhosted.org/packages/47/94/bcd5ab47d387942aa3e043512b6977d3440c14cc87f47ba675eeb4d77288/frat_brain-1.6.5-py3-none-any.whl",
            "yanked": false,
            "yanked_reason": null
        },
        {
            "comment_text": "",
            "digests": {
                "blake2b_256": "9e90fe96aae7645435f5e3351cb97fee9ef63ceefe876dc3c0a554656117179f",
                "md5": "a2e2c8584eff287803e5c93734faf8b9",
                "sha256": "be8584ecc912b6e92c0df6ab294f68de2c684310ae9dfbb1ce1bdeed6b9bea7e"
            },
            "downloads": -1,
            "filename": "frat_brain-1.6.5.tar.gz",
            "has_sig": false,
            "md5_digest": "a2e2c8584eff287803e5c93734faf8b9",
            "packagetype": "sdist",
            "python_version": "source",
            "requires_python": "<3.11,>=3.10",
            "size": 215212,
            "upload_time": "2024-05-02T14:15:24",
            "upload_time_iso_8601": "2024-05-02T14:15:24.266180Z",
            "url": "https://files.pythonhosted.org/packages/9e/90/fe96aae7645435f5e3351cb97fee9ef63ceefe876dc3c0a554656117179f/frat_brain-1.6.5.tar.gz",
            "yanked": false,
            "yanked_reason": null
        }
    ],
    "upload_time": "2024-05-02 14:15:24",
    "github": true,
    "gitlab": false,
    "bitbucket": false,
    "codeberg": false,
    "github_user": "elliohow",
    "github_project": "fMRI_ROI_Analysis_Tool",
    "travis_ci": false,
    "coveralls": false,
    "github_actions": false,
    "lcname": "frat-brain"
}
Elliot Howley
Elapsed time: 0.21488s