fugassem

Name	fugassem JSON
Version	0.3.6 JSON
	download
home_page	https://github.com/biobakery/fugassem
Summary	FUGAsseM: Function predictor of Uncharacterized Gene products by Assessing high-dimensional community data in microbiome
upload_time	2024-08-01 17:31:51
maintainer	None
docs_url	None
author	FUGAsseM Development Team
requires_python	None
license	MIT
keywords	microbial microbiome bioinformatics microbiology metagenomic metatranscriptomic function prediction unknown proteins microbial dark matter fugassem anadama2
VCS
bugtrack_url
requirements	No requirements were recorded.
Travis-CI	No Travis.
coveralls test coverage	No coveralls.

            FUGAsseM is a computational tool based on a “guild by association” approach to predict functions of novel gene products in the context of microbial communities. It uses machine learning methods to predict functions of microbial proteins by integrating multiple types of community-based data, including co-expression patterns from metatranscriptomics, co-localization patterns from metagenomic assemblies, homologous-based annotation, domain-based annotations, etc.



            

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